Tipula oleracea nudivirus

Taxonomy: Viruses; Naldaviricetes; Lefavirales; Nudiviridae; Deltanudivirus

Average proteome isoelectric point is 6.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 131 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0B4VFK1|A0A0B4VFK1_9VIRU TK3 OS=Tipula oleracea nudivirus OX=1546257 GN=tk3 PE=4 SV=1
MM1 pKa = 7.69AFLISEE7 pKa = 4.02PAGRR11 pKa = 11.84RR12 pKa = 11.84FEE14 pKa = 4.24EE15 pKa = 5.26LYY17 pKa = 10.28GDD19 pKa = 4.45MYY21 pKa = 11.46RR22 pKa = 11.84EE23 pKa = 4.12VTKK26 pKa = 10.68LANFYY31 pKa = 10.75SGEE34 pKa = 4.13DD35 pKa = 3.52VVDD38 pKa = 3.97NSVLYY43 pKa = 9.73PMIEE47 pKa = 3.85ISDD50 pKa = 4.19DD51 pKa = 3.48EE52 pKa = 4.74SSIDD56 pKa = 3.79EE57 pKa = 4.81DD58 pKa = 5.41GEE60 pKa = 4.39DD61 pKa = 3.7AVDD64 pKa = 4.08NSVLYY69 pKa = 9.76PMIEE73 pKa = 3.85ISDD76 pKa = 4.19DD77 pKa = 3.48EE78 pKa = 4.74SSIDD82 pKa = 3.72EE83 pKa = 5.09DD84 pKa = 5.11GVIPDD89 pKa = 3.89QLMDD93 pKa = 5.51DD94 pKa = 4.63MSDD97 pKa = 4.32CDD99 pKa = 5.66DD100 pKa = 5.08DD101 pKa = 6.52DD102 pKa = 5.05ISEE105 pKa = 4.8GDD107 pKa = 4.44DD108 pKa = 4.11DD109 pKa = 6.94DD110 pKa = 7.11DD111 pKa = 4.53MSEE114 pKa = 5.36DD115 pKa = 3.82DD116 pKa = 4.13GKK118 pKa = 10.75NNYY121 pKa = 8.28MEE123 pKa = 3.96IHH125 pKa = 6.31SKK127 pKa = 10.43FKK129 pKa = 10.96EE130 pKa = 3.77FLTYY134 pKa = 10.77NVLKK138 pKa = 10.68NIRR141 pKa = 11.84TMNGNIYY148 pKa = 10.71SFISRR153 pKa = 11.84NNYY156 pKa = 8.45YY157 pKa = 10.4VSEE160 pKa = 4.09LMRR163 pKa = 11.84NVVKK167 pKa = 10.76DD168 pKa = 4.28DD169 pKa = 3.25IQFEE173 pKa = 4.5IKK175 pKa = 10.43FKK177 pKa = 11.07INFKK181 pKa = 9.76TYY183 pKa = 9.79HH184 pKa = 6.88LLTIGSSLPNNIMNDD199 pKa = 3.17NWEE202 pKa = 4.11KK203 pKa = 10.99LQVHH207 pKa = 6.91KK208 pKa = 10.73KK209 pKa = 8.92NQIEE213 pKa = 4.21CRR215 pKa = 11.84VKK217 pKa = 10.26NVKK220 pKa = 10.09NVIFTDD226 pKa = 3.38KK227 pKa = 11.05SMSFFSHH234 pKa = 6.51VGRR237 pKa = 11.84VHH239 pKa = 7.07WNPEE243 pKa = 3.77LKK245 pKa = 10.24VAYY248 pKa = 10.01SLTIPIEE255 pKa = 4.17EE256 pKa = 4.59PPEE259 pKa = 3.84KK260 pKa = 10.48LKK262 pKa = 11.1NQIFKK267 pKa = 9.87NQKK270 pKa = 8.71TISSLNFEE278 pKa = 4.57CFEE281 pKa = 3.95AAEE284 pKa = 4.37YY285 pKa = 10.0PFNLNMYY292 pKa = 8.82FVKK295 pKa = 10.03TYY297 pKa = 9.51NFKK300 pKa = 10.52IIQCIQNDD308 pKa = 3.71DD309 pKa = 3.48VEE311 pKa = 4.53YY312 pKa = 10.96NITFEE317 pKa = 4.17ICNGLNDD324 pKa = 5.53DD325 pKa = 4.54SLTTKK330 pKa = 10.64KK331 pKa = 8.84ITEE334 pKa = 4.49IIADD338 pKa = 3.79VKK340 pKa = 11.29SNWNSFNLNGIIEE353 pKa = 4.46TKK355 pKa = 9.47LYY357 pKa = 10.23KK358 pKa = 10.02YY359 pKa = 9.97RR360 pKa = 11.84VYY362 pKa = 10.82NEE364 pKa = 4.69HH365 pKa = 6.92EE366 pKa = 4.59VTPLPQIGFKK376 pKa = 10.77DD377 pKa = 3.52AVIALNDD384 pKa = 3.35IYY386 pKa = 11.26DD387 pKa = 3.74YY388 pKa = 11.91

Molecular weight: 45.23 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0B4VG75|A0A0B4VG75_9VIRU Uncharacterized protein OS=Tipula oleracea nudivirus OX=1546257 GN=TONV_061 PE=4 SV=1
MM1 pKa = 7.53KK2 pKa = 9.94IIHH5 pKa = 6.13FSFYY9 pKa = 10.47KK10 pKa = 10.41SYY12 pKa = 10.33ISLYY16 pKa = 10.13IYY18 pKa = 10.16IRR20 pKa = 11.84NKK22 pKa = 10.56NEE24 pKa = 3.37NKK26 pKa = 9.47TYY28 pKa = 10.79RR29 pKa = 11.84SFLLIKK35 pKa = 10.27KK36 pKa = 8.41MPYY39 pKa = 9.75HH40 pKa = 6.07EE41 pKa = 4.91LEE43 pKa = 4.44PYY45 pKa = 9.27EE46 pKa = 4.3RR47 pKa = 11.84SRR49 pKa = 11.84SRR51 pKa = 11.84SHH53 pKa = 6.54SRR55 pKa = 11.84SHH57 pKa = 6.79LSGGRR62 pKa = 11.84TRR64 pKa = 11.84ARR66 pKa = 11.84SRR68 pKa = 11.84SGSRR72 pKa = 11.84SGGARR77 pKa = 11.84RR78 pKa = 11.84RR79 pKa = 11.84SGSRR83 pKa = 11.84RR84 pKa = 11.84RR85 pKa = 11.84SRR87 pKa = 11.84SRR89 pKa = 11.84SGSRR93 pKa = 11.84SRR95 pKa = 11.84GAVGQRR101 pKa = 11.84RR102 pKa = 11.84RR103 pKa = 11.84RR104 pKa = 11.84RR105 pKa = 11.84GGRR108 pKa = 11.84RR109 pKa = 11.84RR110 pKa = 11.84SRR112 pKa = 11.84SRR114 pKa = 11.84SRR116 pKa = 11.84SRR118 pKa = 11.84YY119 pKa = 8.61

Molecular weight: 14.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

131

0

131

41473

36

1380

316.6

36.98

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

2.505 ± 0.107

1.681 ± 0.105

6.071 ± 0.155

5.893 ± 0.199

5.17 ± 0.161

2.452 ± 0.107

1.854 ± 0.086

10.952 ± 0.182

8.953 ± 0.215

8.813 ± 0.167

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.105 ± 0.077

10.375 ± 0.241

3.2 ± 0.146

3.532 ± 0.163

2.696 ± 0.112

7.099 ± 0.137

5.9 ± 0.133

4.63 ± 0.114

0.422 ± 0.04

5.698 ± 0.168
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski