Soybean chlorotic mottle virus

Taxonomy: Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Soymovirus

Average proteome isoelectric point is 7.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|P15633|Y3_SOCMV Uncharacterized protein 3 OS=Soybean chlorotic mottle virus OX=10651 GN=ORF III PE=4 SV=2
MM1 pKa = 7.82PGDD4 pKa = 3.19NWTNSIIFRR13 pKa = 11.84IKK15 pKa = 8.81TLKK18 pKa = 10.55DD19 pKa = 3.56QIIEE23 pKa = 3.92WSKK26 pKa = 11.31NPTEE30 pKa = 4.0EE31 pKa = 4.3NEE33 pKa = 4.3YY34 pKa = 10.62FSEE37 pKa = 5.09KK38 pKa = 10.43YY39 pKa = 10.21LEE41 pKa = 4.8KK42 pKa = 10.66INTLTKK48 pKa = 10.13TLDD51 pKa = 3.04WCEE54 pKa = 4.02KK55 pKa = 8.66SNKK58 pKa = 9.82SEE60 pKa = 4.75VEE62 pKa = 4.07LRR64 pKa = 11.84WLNQALSLPHH74 pKa = 5.86QVPPPRR80 pKa = 11.84YY81 pKa = 8.21SYY83 pKa = 10.65IRR85 pKa = 11.84SEE87 pKa = 4.01SSRR90 pKa = 11.84NNLRR94 pKa = 11.84NSARR98 pKa = 11.84NQPQNLVSEE107 pKa = 4.33QDD109 pKa = 3.16SDD111 pKa = 4.55SNRR114 pKa = 11.84EE115 pKa = 3.76NN116 pKa = 3.28

Molecular weight: 13.77 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|P15635|Y8_SOCMV Uncharacterized protein 8 OS=Soybean chlorotic mottle virus OX=10651 GN=ORF VIII PE=4 SV=1
MM1 pKa = 8.09DD2 pKa = 4.08VGNQILEE9 pKa = 4.28PKK11 pKa = 9.28NLKK14 pKa = 10.25RR15 pKa = 11.84NSGKK19 pKa = 10.0LRR21 pKa = 11.84NILKK25 pKa = 10.12RR26 pKa = 11.84ISGNGIIKK34 pKa = 9.46EE35 pKa = 4.12RR36 pKa = 11.84KK37 pKa = 8.7RR38 pKa = 11.84RR39 pKa = 11.84LGKK42 pKa = 9.73NAPLEE47 pKa = 3.98NSKK50 pKa = 10.52LVQQVKK56 pKa = 10.24RR57 pKa = 11.84NVNVGYY63 pKa = 8.41ATKK66 pKa = 10.26KK67 pKa = 9.27DD68 pKa = 3.75TMRR71 pKa = 11.84MSAQKK76 pKa = 9.53RR77 pKa = 11.84TTKK80 pKa = 10.37RR81 pKa = 11.84LKK83 pKa = 10.02PP84 pKa = 3.61

Molecular weight: 9.65 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

9

0

9

2639

84

692

293.2

34.16

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.486 ± 0.524

1.667 ± 0.371

4.509 ± 0.221

9.284 ± 0.53

4.168 ± 0.343

3.676 ± 0.341

2.008 ± 0.178

7.73 ± 0.69

11.216 ± 0.401

10.421 ± 0.606

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.288 ± 0.201

6.366 ± 0.665

3.751 ± 0.324

5.343 ± 0.384

4.358 ± 0.385

7.275 ± 0.383

5.116 ± 0.218

3.827 ± 0.342

1.061 ± 0.237

3.448 ± 0.303
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski