Tomato leaf curl Mayotte virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus; unclassified Begomovirus

Average proteome isoelectric point is 7.96

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q5DVB5|Q5DVB5_9GEMI Transcriptional activator protein OS=Tomato leaf curl Mayotte virus OX=302100 PE=3 SV=1
MM1 pKa = 6.95YY2 pKa = 9.64RR3 pKa = 11.84YY4 pKa = 9.35PEE6 pKa = 4.13KK7 pKa = 10.56KK8 pKa = 9.06RR9 pKa = 11.84EE10 pKa = 4.01LVNRR14 pKa = 11.84YY15 pKa = 8.52PLTNMPSAPKK25 pKa = 10.15KK26 pKa = 9.77FQINAKK32 pKa = 10.1NIFLTYY38 pKa = 8.76PQCTLSKK45 pKa = 10.94EE46 pKa = 4.23EE47 pKa = 4.42TLSQIQNLSLPSNPKK62 pKa = 9.72FIKK65 pKa = 9.66ICKK68 pKa = 8.82EE69 pKa = 3.39LHH71 pKa = 6.02QNGEE75 pKa = 3.97PHH77 pKa = 6.32IHH79 pKa = 6.11MFIQFEE85 pKa = 4.28GKK87 pKa = 9.52IRR89 pKa = 11.84ITNCRR94 pKa = 11.84LFDD97 pKa = 4.02LVSPTRR103 pKa = 11.84SVHH106 pKa = 5.0FHH108 pKa = 6.81PNIQGAKK115 pKa = 9.25SSSDD119 pKa = 3.11VKK121 pKa = 11.24SYY123 pKa = 10.79IDD125 pKa = 3.7KK126 pKa = 11.33DD127 pKa = 3.49GDD129 pKa = 3.67TLEE132 pKa = 4.14WGEE135 pKa = 3.84FQIDD139 pKa = 3.21GRR141 pKa = 11.84SARR144 pKa = 11.84GGQQSANDD152 pKa = 3.81AYY154 pKa = 10.7AAALNTGSKK163 pKa = 10.3SEE165 pKa = 3.9ALRR168 pKa = 11.84VIKK171 pKa = 10.2EE172 pKa = 3.88LAPKK176 pKa = 10.6DD177 pKa = 3.7FVLQFHH183 pKa = 6.68NLNSNLDD190 pKa = 4.08RR191 pKa = 11.84IFQEE195 pKa = 4.33PPAPYY200 pKa = 9.57ISPFLSSSFNQVPEE214 pKa = 4.17EE215 pKa = 4.05LEE217 pKa = 3.68EE218 pKa = 4.19WACEE222 pKa = 4.05NVMDD226 pKa = 5.57AAARR230 pKa = 11.84PWRR233 pKa = 11.84PISIVIEE240 pKa = 4.23GDD242 pKa = 3.2SRR244 pKa = 11.84TGKK247 pKa = 8.52TMWARR252 pKa = 11.84SLGPHH257 pKa = 6.71NYY259 pKa = 10.18LCGHH263 pKa = 7.38LDD265 pKa = 4.18LSPKK269 pKa = 10.15VYY271 pKa = 11.07SNDD274 pKa = 2.25AWYY277 pKa = 10.92NVIDD281 pKa = 5.2DD282 pKa = 4.41VDD284 pKa = 3.61PHH286 pKa = 5.85YY287 pKa = 11.0LKK289 pKa = 10.7HH290 pKa = 6.2FKK292 pKa = 10.7EE293 pKa = 4.46FMGAQRR299 pKa = 11.84DD300 pKa = 3.81WQSNTKK306 pKa = 9.26YY307 pKa = 10.63GKK309 pKa = 9.49PIQIKK314 pKa = 10.42GGIPTIFLCNPGPTSSYY331 pKa = 11.31KK332 pKa = 10.67EE333 pKa = 3.89FLDD336 pKa = 3.83EE337 pKa = 4.65EE338 pKa = 4.54KK339 pKa = 10.79NAPLRR344 pKa = 11.84DD345 pKa = 3.51WAVKK349 pKa = 9.66NATFITLHH357 pKa = 6.17EE358 pKa = 4.49PLYY361 pKa = 10.14STANQSPAQISQEE374 pKa = 4.2EE375 pKa = 4.54GSEE378 pKa = 3.96AA379 pKa = 3.7

Molecular weight: 43.1 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q5DVB8|Q5DVB8_9GEMI Protein V2 OS=Tomato leaf curl Mayotte virus OX=302100 GN=AV2 PE=3 SV=1
MM1 pKa = 7.71SKK3 pKa = 10.35RR4 pKa = 11.84PADD7 pKa = 3.87IIISTPASKK16 pKa = 10.3VRR18 pKa = 11.84RR19 pKa = 11.84RR20 pKa = 11.84LNFDD24 pKa = 3.04SPYY27 pKa = 9.1TSRR30 pKa = 11.84AVAPIVPGTSRR41 pKa = 11.84RR42 pKa = 11.84RR43 pKa = 11.84SWTYY47 pKa = 9.79RR48 pKa = 11.84PMYY51 pKa = 9.7RR52 pKa = 11.84KK53 pKa = 9.08PRR55 pKa = 11.84TYY57 pKa = 11.0RR58 pKa = 11.84MYY60 pKa = 10.75RR61 pKa = 11.84SPDD64 pKa = 3.29VPKK67 pKa = 10.81GCEE70 pKa = 4.39GPCKK74 pKa = 9.35VQSYY78 pKa = 6.99EE79 pKa = 3.67QRR81 pKa = 11.84DD82 pKa = 4.05DD83 pKa = 3.72VKK85 pKa = 9.5HH86 pKa = 5.48TGIVRR91 pKa = 11.84CVSDD95 pKa = 3.31VTRR98 pKa = 11.84GSGITHH104 pKa = 6.35RR105 pKa = 11.84VGKK108 pKa = 9.5RR109 pKa = 11.84FCVKK113 pKa = 10.3SIYY116 pKa = 10.1ILGKK120 pKa = 9.09IWMDD124 pKa = 3.64EE125 pKa = 4.09NIKK128 pKa = 10.06KK129 pKa = 9.97QNHH132 pKa = 4.95TNQVMFFLVRR142 pKa = 11.84DD143 pKa = 3.77RR144 pKa = 11.84RR145 pKa = 11.84PYY147 pKa = 10.07GAAPMDD153 pKa = 4.26FGQVFNMFDD162 pKa = 3.99NEE164 pKa = 4.11PSTATVKK171 pKa = 10.81NDD173 pKa = 2.84LRR175 pKa = 11.84DD176 pKa = 3.47RR177 pKa = 11.84YY178 pKa = 9.28QVLRR182 pKa = 11.84KK183 pKa = 8.77FHH185 pKa = 5.93ATVVGGPSGMKK196 pKa = 9.47EE197 pKa = 3.54QALVKK202 pKa = 10.31RR203 pKa = 11.84FFRR206 pKa = 11.84INSHH210 pKa = 3.89VTYY213 pKa = 10.54NHH215 pKa = 5.79QEE217 pKa = 3.49AAKK220 pKa = 10.4YY221 pKa = 9.25EE222 pKa = 4.13NHH224 pKa = 6.46TEE226 pKa = 3.99NALLLYY232 pKa = 7.29MACTHH237 pKa = 7.07ASNPVYY243 pKa = 9.86ATLKK247 pKa = 9.47IRR249 pKa = 11.84IYY251 pKa = 10.69FYY253 pKa = 11.26DD254 pKa = 3.31SVGNN258 pKa = 3.81

Molecular weight: 29.89 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1165

116

379

194.2

22.3

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.322 ± 0.63

2.232 ± 0.426

4.549 ± 0.541

5.064 ± 0.725

4.378 ± 0.366

4.721 ± 0.425

3.948 ± 0.792

6.009 ± 0.893

5.923 ± 0.457

7.21 ± 0.921

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.232 ± 0.367

4.979 ± 0.629

6.438 ± 0.66

5.494 ± 0.755

6.953 ± 1.008

8.412 ± 1.488

5.751 ± 0.921

5.236 ± 1.263

1.288 ± 0.219

3.863 ± 0.569
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski