Sus scrofa papillomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Dyodeltapapillomavirus; Dyodeltapapillomavirus 1

Average proteome isoelectric point is 6.14

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|B5SPY3|B5SPY3_9PAPI Regulatory protein E2 OS=Sus scrofa papillomavirus 1 OX=446138 GN=E2 PE=3 SV=1
MM1 pKa = 7.71EE2 pKa = 5.68EE3 pKa = 4.35GNSPLEE9 pKa = 4.46GCSGDD14 pKa = 3.72WILVEE19 pKa = 4.39AEE21 pKa = 4.38EE22 pKa = 4.64EE23 pKa = 4.39GGACGGDD30 pKa = 3.44GEE32 pKa = 4.69TDD34 pKa = 3.24SDD36 pKa = 4.34DD37 pKa = 4.64GYY39 pKa = 11.42DD40 pKa = 3.35MVDD43 pKa = 4.99FIDD46 pKa = 4.19DD47 pKa = 3.92TEE49 pKa = 4.56VPQGNSAALYY59 pKa = 9.36HH60 pKa = 6.46AQTLYY65 pKa = 10.01DD66 pKa = 3.72TAVLPQCKK74 pKa = 8.82RR75 pKa = 11.84KK76 pKa = 9.56HH77 pKa = 5.81VNSPKK82 pKa = 10.32VKK84 pKa = 9.39PVCDD88 pKa = 4.3LSPRR92 pKa = 11.84LAAINIGTEE101 pKa = 4.04SQQTAKK107 pKa = 10.35RR108 pKa = 11.84RR109 pKa = 11.84LFVAPPDD116 pKa = 3.59SGYY119 pKa = 11.55GNTLEE124 pKa = 4.18EE125 pKa = 4.97ANTQEE130 pKa = 4.11MGEE133 pKa = 4.35TEE135 pKa = 4.3VPGGNGGEE143 pKa = 4.32GEE145 pKa = 4.34HH146 pKa = 5.97MVAEE150 pKa = 4.36AFGQEE155 pKa = 3.68RR156 pKa = 11.84RR157 pKa = 11.84RR158 pKa = 11.84AAMLGQFKK166 pKa = 10.41EE167 pKa = 4.0RR168 pKa = 11.84FGISFCDD175 pKa = 3.29LTRR178 pKa = 11.84PFKK181 pKa = 11.09SNKK184 pKa = 5.4TTCGDD189 pKa = 3.35WVVYY193 pKa = 10.05ACGMSDD199 pKa = 3.76ALADD203 pKa = 3.72ATSDD207 pKa = 3.93LLSPHH212 pKa = 7.2CIYY215 pKa = 11.37GNITKK220 pKa = 9.76EE221 pKa = 3.89HH222 pKa = 6.01SALGNSLLMLLRR234 pKa = 11.84FTHH237 pKa = 6.58AKK239 pKa = 10.08NRR241 pKa = 11.84DD242 pKa = 3.61TLTKK246 pKa = 10.73LLGSHH251 pKa = 5.4MTIPAYY257 pKa = 10.67NIVAEE262 pKa = 4.39PPKK265 pKa = 10.18IRR267 pKa = 11.84CPAAAIFWYY276 pKa = 10.17RR277 pKa = 11.84RR278 pKa = 11.84STTQGVTVFGDD289 pKa = 3.27VCEE292 pKa = 4.85WITKK296 pKa = 8.87QVTVGGGEE304 pKa = 4.26CAFEE308 pKa = 4.52LSTMIQWAYY317 pKa = 11.08DD318 pKa = 3.34SDD320 pKa = 4.15LTDD323 pKa = 3.65EE324 pKa = 4.52AQVAYY329 pKa = 9.65EE330 pKa = 4.01YY331 pKa = 11.57AKK333 pKa = 10.98LADD336 pKa = 3.55SDD338 pKa = 4.28RR339 pKa = 11.84NAEE342 pKa = 4.37AFLKK346 pKa = 10.78SNCQAKK352 pKa = 9.52YY353 pKa = 11.04VKK355 pKa = 10.04DD356 pKa = 3.62CCTMVRR362 pKa = 11.84LYY364 pKa = 10.93KK365 pKa = 10.17KK366 pKa = 10.78AEE368 pKa = 3.9MHH370 pKa = 6.13NMTMGQWVRR379 pKa = 11.84KK380 pKa = 8.63QADD383 pKa = 3.81RR384 pKa = 11.84YY385 pKa = 9.6EE386 pKa = 4.86GEE388 pKa = 4.07GNYY391 pKa = 10.03RR392 pKa = 11.84PIVQFLKK399 pKa = 10.28FQGIEE404 pKa = 4.59FIPFMHH410 pKa = 7.07TLAQFLKK417 pKa = 10.65GIPKK421 pKa = 9.96RR422 pKa = 11.84NCLVIHH428 pKa = 6.61GPPNTGKK435 pKa = 10.55SLFTMSLCSFLGGKK449 pKa = 9.53VISFVNSKK457 pKa = 8.57SHH459 pKa = 7.02FWLQPLGEE467 pKa = 4.64CKK469 pKa = 10.17VALLDD474 pKa = 5.14DD475 pKa = 3.97ATRR478 pKa = 11.84PCWDD482 pKa = 3.51YY483 pKa = 11.68FDD485 pKa = 6.11LYY487 pKa = 11.09LRR489 pKa = 11.84NLLDD493 pKa = 4.33GNPVSLDD500 pKa = 3.33AKK502 pKa = 10.13HH503 pKa = 6.26RR504 pKa = 11.84APIQIKK510 pKa = 10.32GPPLLITSNVGISTEE525 pKa = 4.12DD526 pKa = 2.67RR527 pKa = 11.84WKK529 pKa = 10.11YY530 pKa = 8.2LHH532 pKa = 6.71SRR534 pKa = 11.84VRR536 pKa = 11.84CFSFPNTLPLDD547 pKa = 4.05SKK549 pKa = 11.35GDD551 pKa = 3.65PVYY554 pKa = 11.01EE555 pKa = 3.83LTALNWKK562 pKa = 10.19SFFTRR567 pKa = 11.84LWSRR571 pKa = 11.84LDD573 pKa = 3.61LKK575 pKa = 10.85EE576 pKa = 4.3GSHH579 pKa = 6.46GEE581 pKa = 3.68AFTALRR587 pKa = 11.84CTTGPAAGPDD597 pKa = 3.34

Molecular weight: 66.26 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|B5SPY4|B5SPY4_9PAPI Minor capsid protein L2 OS=Sus scrofa papillomavirus 1 OX=446138 GN=L2 PE=3 SV=1
MM1 pKa = 7.42EE2 pKa = 5.9RR3 pKa = 11.84LSQRR7 pKa = 11.84LGALQDD13 pKa = 3.55QQLDD17 pKa = 4.36LIEE20 pKa = 5.58KK21 pKa = 9.54DD22 pKa = 3.65SQSIGDD28 pKa = 3.72QLYY31 pKa = 8.17YY32 pKa = 10.19WYY34 pKa = 10.32LQRR37 pKa = 11.84QEE39 pKa = 4.16HH40 pKa = 5.52TLLYY44 pKa = 10.01AARR47 pKa = 11.84KK48 pKa = 9.78KK49 pKa = 10.87GVTSINGQPVPTAQVSHH66 pKa = 6.26SRR68 pKa = 11.84ASQAIEE74 pKa = 3.62MHH76 pKa = 6.79LALQGLGQLYY86 pKa = 10.58AEE88 pKa = 5.17EE89 pKa = 4.77PWTMLQTTWEE99 pKa = 4.59SYY101 pKa = 10.15RR102 pKa = 11.84QTPSGTFKK110 pKa = 10.92KK111 pKa = 10.02GGLSIRR117 pKa = 11.84VQFDD121 pKa = 3.63GEE123 pKa = 4.4KK124 pKa = 10.41DD125 pKa = 3.43NEE127 pKa = 3.98MDD129 pKa = 3.67YY130 pKa = 11.39VLWDD134 pKa = 3.3TVYY137 pKa = 11.64YY138 pKa = 7.09MTGDD142 pKa = 3.53GGWRR146 pKa = 11.84KK147 pKa = 9.96GKK149 pKa = 10.58GGWDD153 pKa = 3.37NTGLYY158 pKa = 10.3YY159 pKa = 10.95LADD162 pKa = 4.05GEE164 pKa = 4.36KK165 pKa = 9.53QHH167 pKa = 6.08YY168 pKa = 10.78VNFKK172 pKa = 9.94TEE174 pKa = 3.74AQKK177 pKa = 10.38FAKK180 pKa = 10.31LGIWKK185 pKa = 8.53VLCTDD190 pKa = 3.34SHH192 pKa = 6.86HH193 pKa = 7.72DD194 pKa = 3.62SDD196 pKa = 5.53LVTSTTTATSTSTQSLSGPCWDD218 pKa = 4.1PHH220 pKa = 6.43PPTTTAEE227 pKa = 4.23STSRR231 pKa = 11.84SPWDD235 pKa = 3.63TPPTEE240 pKa = 3.73TAARR244 pKa = 11.84RR245 pKa = 11.84RR246 pKa = 11.84LATTATPCARR256 pKa = 11.84RR257 pKa = 11.84PQAVPADD264 pKa = 3.99SPSPVPRR271 pKa = 11.84WGPGQGKK278 pKa = 8.99HH279 pKa = 6.27PSTPDD284 pKa = 2.86ATAKK288 pKa = 8.37PTAAPAATNTTTYY301 pKa = 7.03TTTAGRR307 pKa = 11.84GSIGPQCLCDD317 pKa = 4.18CDD319 pKa = 5.63PNTTWGSEE327 pKa = 4.11SQAGVPLTAPLVVLKK342 pKa = 10.8GDD344 pKa = 3.92PNQLKK349 pKa = 10.27CYY351 pKa = 10.16RR352 pKa = 11.84YY353 pKa = 9.01RR354 pKa = 11.84LKK356 pKa = 10.54KK357 pKa = 10.19GRR359 pKa = 11.84RR360 pKa = 11.84KK361 pKa = 9.93SYY363 pKa = 9.75RR364 pKa = 11.84HH365 pKa = 6.83CSTTWQWVGCDD376 pKa = 3.28GVSRR380 pKa = 11.84TGKK383 pKa = 9.83HH384 pKa = 5.55LLCVSFDD391 pKa = 3.55NSAQRR396 pKa = 11.84EE397 pKa = 4.36EE398 pKa = 4.36FLLTAQLPQGVTATRR413 pKa = 11.84ADD415 pKa = 3.78FPLL418 pKa = 5.26

Molecular weight: 46.2 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

2185

165

597

437.0

48.22

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.499 ± 0.661

2.38 ± 0.603

6.224 ± 0.166

4.805 ± 0.519

4.027 ± 0.567

8.65 ± 1.077

2.288 ± 0.057

3.432 ± 0.528

4.119 ± 0.753

8.741 ± 0.417

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.739 ± 0.29

3.341 ± 0.731

7.506 ± 1.15

4.165 ± 0.732

6.178 ± 0.595

7.048 ± 0.391

8.146 ± 0.88

5.995 ± 0.713

1.831 ± 0.413

2.883 ± 0.41
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski