Capybara microvirus Cap3_SP_445

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.69

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W8L8|A0A4P8W8L8_9VIRU Major capsid protein OS=Capybara microvirus Cap3_SP_445 OX=2585457 PE=3 SV=1
MM1 pKa = 7.17KK2 pKa = 10.3QNPSNCFKK10 pKa = 10.81ARR12 pKa = 11.84SDD14 pKa = 3.33GKK16 pKa = 10.38VFPGEE21 pKa = 4.05VFSPIVKK28 pKa = 9.8EE29 pKa = 3.86YY30 pKa = 11.29SLIDD34 pKa = 3.71SVIMIGDD41 pKa = 4.04TPRR44 pKa = 11.84DD45 pKa = 4.01FIIHH49 pKa = 5.87KK50 pKa = 8.89TPEE53 pKa = 4.91LINEE57 pKa = 3.88YY58 pKa = 10.83DD59 pKa = 3.3IDD61 pKa = 3.91KK62 pKa = 11.04QIAAEE67 pKa = 4.19AASCDD72 pKa = 3.33IKK74 pKa = 11.31SQILAAMQNGSIDD87 pKa = 3.54SLAWDD92 pKa = 4.9GSSGAIDD99 pKa = 3.83ATSMPSNLMEE109 pKa = 4.27AQNIINAGLNAYY121 pKa = 10.01DD122 pKa = 5.39SLDD125 pKa = 3.84PDD127 pKa = 4.17LKK129 pKa = 11.11KK130 pKa = 10.71KK131 pKa = 10.75GLDD134 pKa = 3.63FIKK137 pKa = 11.0NMTQTEE143 pKa = 4.41FEE145 pKa = 4.66SYY147 pKa = 9.75IKK149 pKa = 10.56SLIPSQPIEE158 pKa = 4.17KK159 pKa = 10.56DD160 pKa = 2.94GDD162 pKa = 3.77INGG165 pKa = 3.74

Molecular weight: 18.04 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W8L6|A0A4P8W8L6_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_445 OX=2585457 PE=4 SV=1
MM1 pKa = 7.51KK2 pKa = 9.74PCLHH6 pKa = 7.04PSLVVVLGDD15 pKa = 4.54NPDD18 pKa = 3.47TGKK21 pKa = 10.86KK22 pKa = 9.47IIRR25 pKa = 11.84FRR27 pKa = 11.84GRR29 pKa = 11.84SEE31 pKa = 4.04DD32 pKa = 4.08TIQSLSDD39 pKa = 3.16LYY41 pKa = 11.38GRR43 pKa = 11.84EE44 pKa = 3.98NVLLIPCGQCEE55 pKa = 4.28SCRR58 pKa = 11.84INYY61 pKa = 8.16AQVWSIRR68 pKa = 11.84CSLEE72 pKa = 4.45AMMTPYY78 pKa = 10.38HH79 pKa = 5.96YY80 pKa = 10.52FITLTYY86 pKa = 10.87DD87 pKa = 3.38DD88 pKa = 4.32LHH90 pKa = 8.08YY91 pKa = 10.94PFANLSDD98 pKa = 3.5FTKK101 pKa = 9.63WMKK104 pKa = 10.51RR105 pKa = 11.84MRR107 pKa = 11.84KK108 pKa = 9.28NYY110 pKa = 8.51PDD112 pKa = 3.22HH113 pKa = 6.3HH114 pKa = 6.67FKK116 pKa = 11.29YY117 pKa = 10.15FMSMEE122 pKa = 4.11RR123 pKa = 11.84GEE125 pKa = 4.37RR126 pKa = 11.84TNRR129 pKa = 11.84LHH131 pKa = 5.94FHH133 pKa = 6.79VILFSQIALSLSDD146 pKa = 3.46GKK148 pKa = 10.83FINGFMRR155 pKa = 11.84YY156 pKa = 8.16KK157 pKa = 10.52AKK159 pKa = 10.43EE160 pKa = 3.87IQSTWNLGVNNEE172 pKa = 3.88VSEE175 pKa = 4.5FEE177 pKa = 4.43CACAKK182 pKa = 10.28YY183 pKa = 9.28VAKK186 pKa = 9.42YY187 pKa = 7.8TSKK190 pKa = 10.9NGLVRR195 pKa = 11.84MSRR198 pKa = 11.84NLGKK202 pKa = 10.49SYY204 pKa = 10.96VLSHH208 pKa = 6.73ASEE211 pKa = 3.95IVADD215 pKa = 3.86NFKK218 pKa = 11.09VYY220 pKa = 11.19GDD222 pKa = 3.56FSDD225 pKa = 4.56RR226 pKa = 11.84NRR228 pKa = 11.84YY229 pKa = 7.23WVNLPSQCALWLLDD243 pKa = 4.02FYY245 pKa = 11.25EE246 pKa = 5.12SNVLSYY252 pKa = 10.96KK253 pKa = 10.53EE254 pKa = 3.96SLQVLSHH261 pKa = 6.69LKK263 pKa = 10.16QIYY266 pKa = 9.66SMKK269 pKa = 10.08NRR271 pKa = 11.84CSTCEE276 pKa = 4.31DD277 pKa = 3.44IEE279 pKa = 4.69VIDD282 pKa = 4.47TIYY285 pKa = 10.93DD286 pKa = 3.54EE287 pKa = 4.5KK288 pKa = 11.12NKK290 pKa = 10.08KK291 pKa = 10.12RR292 pKa = 11.84GVKK295 pKa = 10.14GCLL298 pKa = 3.1

Molecular weight: 34.83 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1378

88

559

229.7

25.84

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.894 ± 0.897

1.742 ± 0.578

6.531 ± 0.632

4.862 ± 0.411

5.007 ± 0.44

5.806 ± 1.015

1.742 ± 0.416

6.386 ± 1.296

6.313 ± 0.682

7.983 ± 0.727

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.83 ± 0.281

5.66 ± 0.752

3.846 ± 0.769

3.701 ± 0.373

3.846 ± 0.643

9.579 ± 0.761

5.443 ± 0.844

5.66 ± 0.701

1.451 ± 0.308

4.717 ± 0.759
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski