Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_445

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
7.988AlaAla: 7.988 ± 2.532
1.452AlaCys: 1.452 ± 0.979
1.452AlaAsp: 1.452 ± 1.02
4.357AlaGlu: 4.357 ± 1.824
4.357AlaPhe: 4.357 ± 1.759
2.179AlaGly: 2.179 ± 1.741
0.726AlaHis: 0.726 ± 0.804
0.726AlaIle: 0.726 ± 0.819
3.631AlaLys: 3.631 ± 1.987
2.179AlaLeu: 2.179 ± 1.506
2.179AlaMet: 2.179 ± 1.217
3.631AlaAsn: 3.631 ± 0.819
2.905AlaPro: 2.905 ± 1.879
4.357AlaGln: 4.357 ± 0.763
3.631AlaArg: 3.631 ± 1.847
5.81AlaSer: 5.81 ± 0.951
6.536AlaThr: 6.536 ± 2.892
5.81AlaVal: 5.81 ± 2.769
1.452AlaTrp: 1.452 ± 0.783
3.631AlaTyr: 3.631 ± 1.349
0.0AlaXaa: 0.0 ± 0.0
Cys
2.179CysAla: 2.179 ± 2.119
0.0CysCys: 0.0 ± 0.0
0.726CysAsp: 0.726 ± 0.819
1.452CysGlu: 1.452 ± 1.412
0.726CysPhe: 0.726 ± 0.819
0.726CysGly: 0.726 ± 0.706
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
1.452CysLys: 1.452 ± 0.747
3.631CysLeu: 3.631 ± 1.203
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
0.0CysPro: 0.0 ± 0.0
0.726CysGln: 0.726 ± 0.803
0.726CysArg: 0.726 ± 0.706
2.179CysSer: 2.179 ± 1.506
1.452CysThr: 1.452 ± 0.813
1.452CysVal: 1.452 ± 0.813
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
0.726AspAla: 0.726 ± 0.819
0.0AspCys: 0.0 ± 0.0
3.631AspAsp: 3.631 ± 0.948
2.905AspGlu: 2.905 ± 0.85
7.988AspPhe: 7.988 ± 1.312
5.084AspGly: 5.084 ± 1.995
2.179AspHis: 2.179 ± 0.758
3.631AspIle: 3.631 ± 2.199
4.357AspLys: 4.357 ± 1.435
7.262AspLeu: 7.262 ± 1.831
2.179AspMet: 2.179 ± 1.409
2.905AspAsn: 2.905 ± 1.124
0.726AspPro: 0.726 ± 0.819
2.179AspGln: 2.179 ± 0.924
2.179AspArg: 2.179 ± 0.784
5.81AspSer: 5.81 ± 2.512
5.81AspThr: 5.81 ± 1.787
2.179AspVal: 2.179 ± 1.842
2.179AspTrp: 2.179 ± 1.02
1.452AspTyr: 1.452 ± 0.939
0.0AspXaa: 0.0 ± 0.0
Glu
5.81GluAla: 5.81 ± 1.45
1.452GluCys: 1.452 ± 0.562
3.631GluAsp: 3.631 ± 1.684
1.452GluGlu: 1.452 ± 0.939
2.905GluPhe: 2.905 ± 0.679
0.726GluGly: 0.726 ± 0.47
0.0GluHis: 0.0 ± 0.0
2.905GluIle: 2.905 ± 1.266
1.452GluLys: 1.452 ± 0.97
2.179GluLeu: 2.179 ± 1.847
0.726GluMet: 0.726 ± 0.47
3.631GluAsn: 3.631 ± 0.819
2.179GluPro: 2.179 ± 1.423
0.0GluGln: 0.0 ± 0.0
2.905GluArg: 2.905 ± 1.266
6.536GluSer: 6.536 ± 1.826
1.452GluThr: 1.452 ± 0.747
4.357GluVal: 4.357 ± 0.873
0.0GluTrp: 0.0 ± 0.0
4.357GluTyr: 4.357 ± 1.789
0.0GluXaa: 0.0 ± 0.0
Phe
4.357PheAla: 4.357 ± 1.999
0.0PheCys: 0.0 ± 0.0
2.905PheAsp: 2.905 ± 1.495
3.631PheGlu: 3.631 ± 0.94
2.179PhePhe: 2.179 ± 0.997
2.905PheGly: 2.905 ± 1.378
1.452PheHis: 1.452 ± 0.562
4.357PheIle: 4.357 ± 1.611
3.631PheLys: 3.631 ± 1.195
4.357PheLeu: 4.357 ± 2.715
1.452PheMet: 1.452 ± 1.412
2.905PheAsn: 2.905 ± 1.12
1.452PhePro: 1.452 ± 0.783
0.726PheGln: 0.726 ± 0.751
1.452PheArg: 1.452 ± 0.562
2.905PheSer: 2.905 ± 1.593
4.357PheThr: 4.357 ± 1.453
1.452PheVal: 1.452 ± 0.939
0.726PheTrp: 0.726 ± 0.47
2.905PheTyr: 2.905 ± 1.128
0.0PheXaa: 0.0 ± 0.0
Gly
3.631GlyAla: 3.631 ± 1.543
0.726GlyCys: 0.726 ± 0.706
7.262GlyAsp: 7.262 ± 1.305
2.179GlyGlu: 2.179 ± 0.693
2.905GlyPhe: 2.905 ± 1.485
2.905GlyGly: 2.905 ± 2.302
2.179GlyHis: 2.179 ± 1.058
2.179GlyIle: 2.179 ± 1.02
3.631GlyLys: 3.631 ± 1.791
5.81GlyLeu: 5.81 ± 1.328
0.726GlyMet: 0.726 ± 0.746
1.452GlyAsn: 1.452 ± 0.789
0.726GlyPro: 0.726 ± 0.47
2.179GlyGln: 2.179 ± 0.758
2.179GlyArg: 2.179 ± 1.187
7.988GlySer: 7.988 ± 3.761
3.631GlyThr: 3.631 ± 1.786
4.357GlyVal: 4.357 ± 1.125
0.0GlyTrp: 0.0 ± 0.0
1.452GlyTyr: 1.452 ± 0.939
0.0GlyXaa: 0.0 ± 0.0
His
0.726HisAla: 0.726 ± 0.706
0.0HisCys: 0.0 ± 0.0
2.179HisAsp: 2.179 ± 1.02
1.452HisGlu: 1.452 ± 0.939
1.452HisPhe: 1.452 ± 1.412
1.452HisGly: 1.452 ± 0.813
1.452HisHis: 1.452 ± 0.562
0.0HisIle: 0.0 ± 0.0
0.726HisLys: 0.726 ± 0.819
1.452HisLeu: 1.452 ± 0.562
0.726HisMet: 0.726 ± 0.459
0.0HisAsn: 0.0 ± 0.0
0.726HisPro: 0.726 ± 0.706
0.726HisGln: 0.726 ± 0.804
0.726HisArg: 0.726 ± 0.47
1.452HisSer: 1.452 ± 0.939
0.0HisThr: 0.0 ± 0.0
0.726HisVal: 0.726 ± 0.706
0.0HisTrp: 0.0 ± 0.0
1.452HisTyr: 1.452 ± 1.412
0.0HisXaa: 0.0 ± 0.0
Ile
4.357IleAla: 4.357 ± 0.989
0.0IleCys: 0.0 ± 0.0
6.536IleAsp: 6.536 ± 2.817
3.631IleGlu: 3.631 ± 1.195
1.452IlePhe: 1.452 ± 1.155
2.905IleGly: 2.905 ± 1.577
0.726IleHis: 0.726 ± 0.819
4.357IleIle: 4.357 ± 2.028
4.357IleLys: 4.357 ± 2.627
3.631IleLeu: 3.631 ± 0.991
2.905IleMet: 2.905 ± 1.147
7.262IleAsn: 7.262 ± 1.661
2.905IlePro: 2.905 ± 0.904
3.631IleGln: 3.631 ± 1.684
2.179IleArg: 2.179 ± 1.187
2.179IleSer: 2.179 ± 1.409
3.631IleThr: 3.631 ± 0.811
3.631IleVal: 3.631 ± 1.195
0.0IleTrp: 0.0 ± 0.0
3.631IleTyr: 3.631 ± 1.248
0.0IleXaa: 0.0 ± 0.0
Lys
2.905LysAla: 2.905 ± 0.817
0.0LysCys: 0.0 ± 0.0
1.452LysAsp: 1.452 ± 0.783
3.631LysGlu: 3.631 ± 1.694
5.084LysPhe: 5.084 ± 1.713
3.631LysGly: 3.631 ± 0.636
1.452LysHis: 1.452 ± 0.939
2.905LysIle: 2.905 ± 1.481
7.262LysLys: 7.262 ± 1.983
2.179LysLeu: 2.179 ± 1.061
1.452LysMet: 1.452 ± 0.999
5.084LysAsn: 5.084 ± 3.045
1.452LysPro: 1.452 ± 0.562
4.357LysGln: 4.357 ± 1.38
2.179LysArg: 2.179 ± 1.187
5.084LysSer: 5.084 ± 1.549
2.905LysThr: 2.905 ± 1.147
3.631LysVal: 3.631 ± 0.94
1.452LysTrp: 1.452 ± 1.02
5.084LysTyr: 5.084 ± 1.725
0.0LysXaa: 0.0 ± 0.0
Leu
5.81LeuAla: 5.81 ± 2.295
0.0LeuCys: 0.0 ± 0.0
5.81LeuAsp: 5.81 ± 2.077
2.905LeuGlu: 2.905 ± 1.128
2.179LeuPhe: 2.179 ± 0.758
5.81LeuGly: 5.81 ± 1.592
2.905LeuHis: 2.905 ± 1.87
9.441LeuIle: 9.441 ± 3.503
2.179LeuLys: 2.179 ± 0.693
4.357LeuLeu: 4.357 ± 1.028
2.179LeuMet: 2.179 ± 1.158
5.084LeuAsn: 5.084 ± 1.317
2.905LeuPro: 2.905 ± 0.85
2.179LeuGln: 2.179 ± 1.696
3.631LeuArg: 3.631 ± 1.425
9.441LeuSer: 9.441 ± 4.679
2.905LeuThr: 2.905 ± 1.886
4.357LeuVal: 4.357 ± 1.515
2.905LeuTrp: 2.905 ± 0.792
2.905LeuTyr: 2.905 ± 1.481
0.0LeuXaa: 0.0 ± 0.0
Met
1.452MetAla: 1.452 ± 0.939
0.0MetCys: 0.0 ± 0.0
1.452MetAsp: 1.452 ± 0.939
1.452MetGlu: 1.452 ± 0.97
0.726MetPhe: 0.726 ± 0.47
0.0MetGly: 0.0 ± 0.0
0.0MetHis: 0.0 ± 0.0
2.905MetIle: 2.905 ± 1.307
4.357MetLys: 4.357 ± 1.785
0.726MetLeu: 0.726 ± 0.47
0.726MetMet: 0.726 ± 0.706
0.0MetAsn: 0.0 ± 0.0
3.631MetPro: 3.631 ± 1.758
0.726MetGln: 0.726 ± 0.819
2.179MetArg: 2.179 ± 1.187
3.631MetSer: 3.631 ± 2.056
2.905MetThr: 2.905 ± 0.679
0.726MetVal: 0.726 ± 0.803
0.0MetTrp: 0.0 ± 0.0
0.726MetTyr: 0.726 ± 0.47
0.0MetXaa: 0.0 ± 0.0
Asn
5.81AsnAla: 5.81 ± 2.439
2.179AsnCys: 2.179 ± 1.066
0.726AsnAsp: 0.726 ± 0.47
2.179AsnGlu: 2.179 ± 0.693
0.726AsnPhe: 0.726 ± 0.706
5.084AsnGly: 5.084 ± 1.965
0.0AsnHis: 0.0 ± 0.0
3.631AsnIle: 3.631 ± 1.158
2.905AsnLys: 2.905 ± 0.92
7.262AsnLeu: 7.262 ± 2.356
0.726AsnMet: 0.726 ± 0.819
2.179AsnAsn: 2.179 ± 1.696
3.631AsnPro: 3.631 ± 0.94
2.179AsnGln: 2.179 ± 1.02
3.631AsnArg: 3.631 ± 1.717
3.631AsnSer: 3.631 ± 1.296
0.726AsnThr: 0.726 ± 0.804
5.084AsnVal: 5.084 ± 1.424
0.726AsnTrp: 0.726 ± 0.804
3.631AsnTyr: 3.631 ± 1.381
0.0AsnXaa: 0.0 ± 0.0
Pro
1.452ProAla: 1.452 ± 0.939
2.179ProCys: 2.179 ± 1.187
2.905ProAsp: 2.905 ± 1.16
3.631ProGlu: 3.631 ± 1.847
1.452ProPhe: 1.452 ± 0.562
2.905ProGly: 2.905 ± 1.35
0.726ProHis: 0.726 ± 0.47
5.084ProIle: 5.084 ± 2.329
3.631ProLys: 3.631 ± 1.786
2.179ProLeu: 2.179 ± 0.997
0.726ProMet: 0.726 ± 0.47
0.0ProAsn: 0.0 ± 0.0
0.0ProPro: 0.0 ± 0.0
0.0ProGln: 0.0 ± 0.0
0.726ProArg: 0.726 ± 0.819
5.81ProSer: 5.81 ± 1.931
1.452ProThr: 1.452 ± 0.813
1.452ProVal: 1.452 ± 0.813
0.0ProTrp: 0.0 ± 0.0
2.179ProTyr: 2.179 ± 0.758
0.0ProXaa: 0.0 ± 0.0
Gln
1.452GlnAla: 1.452 ± 1.051
2.179GlnCys: 2.179 ± 1.506
0.726GlnAsp: 0.726 ± 0.47
0.726GlnGlu: 0.726 ± 0.803
2.179GlnPhe: 2.179 ± 1.058
1.452GlnGly: 1.452 ± 0.939
1.452GlnHis: 1.452 ± 0.789
2.905GlnIle: 2.905 ± 1.94
3.631GlnLys: 3.631 ± 1.546
0.726GlnLeu: 0.726 ± 0.47
1.452GlnMet: 1.452 ± 0.789
2.905GlnAsn: 2.905 ± 2.329
1.452GlnPro: 1.452 ± 0.783
0.726GlnGln: 0.726 ± 0.804
2.179GlnArg: 2.179 ± 0.924
4.357GlnSer: 4.357 ± 1.125
3.631GlnThr: 3.631 ± 1.275
2.179GlnVal: 2.179 ± 1.187
0.0GlnTrp: 0.0 ± 0.0
0.726GlnTyr: 0.726 ± 0.803
0.0GlnXaa: 0.0 ± 0.0
Arg
0.726ArgAla: 0.726 ± 0.751
2.179ArgCys: 2.179 ± 1.187
3.631ArgAsp: 3.631 ± 1.275
3.631ArgGlu: 3.631 ± 0.819
2.179ArgPhe: 2.179 ± 0.758
2.905ArgGly: 2.905 ± 2.196
0.0ArgHis: 0.0 ± 0.0
1.452ArgIle: 1.452 ± 0.979
2.905ArgLys: 2.905 ± 0.791
2.179ArgLeu: 2.179 ± 0.758
2.179ArgMet: 2.179 ± 1.187
2.179ArgAsn: 2.179 ± 1.187
0.726ArgPro: 0.726 ± 0.47
0.0ArgGln: 0.0 ± 0.0
0.0ArgArg: 0.0 ± 0.0
2.905ArgSer: 2.905 ± 0.679
1.452ArgThr: 1.452 ± 0.562
2.905ArgVal: 2.905 ± 1.165
0.726ArgTrp: 0.726 ± 0.804
3.631ArgTyr: 3.631 ± 1.203
0.0ArgXaa: 0.0 ± 0.0
Ser
2.179SerAla: 2.179 ± 1.02
2.905SerCys: 2.905 ± 1.522
7.262SerAsp: 7.262 ± 1.693
3.631SerGlu: 3.631 ± 1.717
3.631SerPhe: 3.631 ± 1.789
5.81SerGly: 5.81 ± 2.375
1.452SerHis: 1.452 ± 1.412
5.81SerIle: 5.81 ± 1.622
2.179SerLys: 2.179 ± 0.784
13.072SerLeu: 13.072 ± 2.161
4.357SerMet: 4.357 ± 0.991
6.536SerAsn: 6.536 ± 2.282
2.179SerPro: 2.179 ± 0.999
5.81SerGln: 5.81 ± 1.357
4.357SerArg: 4.357 ± 0.953
9.441SerSer: 9.441 ± 5.208
6.536SerThr: 6.536 ± 1.388
2.905SerVal: 2.905 ± 1.022
0.726SerTrp: 0.726 ± 0.47
4.357SerTyr: 4.357 ± 0.932
0.0SerXaa: 0.0 ± 0.0
Thr
7.988ThrAla: 7.988 ± 3.196
0.726ThrCys: 0.726 ± 0.706
1.452ThrAsp: 1.452 ± 0.939
2.179ThrGlu: 2.179 ± 0.999
0.726ThrPhe: 0.726 ± 0.47
5.81ThrGly: 5.81 ± 2.257
0.0ThrHis: 0.0 ± 0.0
5.084ThrIle: 5.084 ± 1.473
4.357ThrLys: 4.357 ± 1.538
3.631ThrLeu: 3.631 ± 1.059
0.726ThrMet: 0.726 ± 0.47
2.179ThrAsn: 2.179 ± 0.758
5.084ThrPro: 5.084 ± 1.549
2.179ThrGln: 2.179 ± 0.951
1.452ThrArg: 1.452 ± 0.939
4.357ThrSer: 4.357 ± 1.321
2.905ThrThr: 2.905 ± 1.879
0.0ThrVal: 0.0 ± 0.0
1.452ThrTrp: 1.452 ± 1.048
2.179ThrTyr: 2.179 ± 0.755
0.0ThrXaa: 0.0 ± 0.0
Val
5.81ValAla: 5.81 ± 1.542
0.726ValCys: 0.726 ± 0.47
5.084ValAsp: 5.084 ± 2.015
1.452ValGlu: 1.452 ± 0.789
2.905ValPhe: 2.905 ± 1.567
2.179ValGly: 2.179 ± 1.061
0.0ValHis: 0.0 ± 0.0
2.905ValIle: 2.905 ± 1.601
2.905ValLys: 2.905 ± 0.817
7.262ValLeu: 7.262 ± 3.125
0.726ValMet: 0.726 ± 0.47
2.179ValAsn: 2.179 ± 1.56
2.905ValPro: 2.905 ± 1.879
2.179ValGln: 2.179 ± 1.409
1.452ValArg: 1.452 ± 0.562
7.262ValSer: 7.262 ± 2.515
0.0ValThr: 0.0 ± 0.0
5.084ValVal: 5.084 ± 1.473
1.452ValTrp: 1.452 ± 0.562
2.179ValTyr: 2.179 ± 0.758
0.0ValXaa: 0.0 ± 0.0
Trp
1.452TrpAla: 1.452 ± 0.939
0.0TrpCys: 0.0 ± 0.0
2.179TrpAsp: 2.179 ± 1.03
0.0TrpGlu: 0.0 ± 0.0
1.452TrpPhe: 1.452 ± 0.789
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
0.726TrpLys: 0.726 ± 0.47
1.452TrpLeu: 1.452 ± 1.02
0.726TrpMet: 0.726 ± 0.706
2.905TrpAsn: 2.905 ± 1.485
0.0TrpPro: 0.0 ± 0.0
0.726TrpGln: 0.726 ± 0.804
0.0TrpArg: 0.0 ± 0.0
1.452TrpSer: 1.452 ± 0.562
0.726TrpThr: 0.726 ± 0.47
0.726TrpVal: 0.726 ± 0.706
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.179TyrAla: 2.179 ± 0.758
0.726TyrCys: 0.726 ± 0.751
4.357TyrAsp: 4.357 ± 1.611
2.179TyrGlu: 2.179 ± 1.298
2.905TyrPhe: 2.905 ± 1.124
3.631TyrGly: 3.631 ± 1.248
0.726TyrHis: 0.726 ± 0.706
3.631TyrIle: 3.631 ± 1.71
2.905TyrLys: 2.905 ± 1.216
4.357TyrLeu: 4.357 ± 1.994
0.726TyrMet: 0.726 ± 0.47
3.631TyrAsn: 3.631 ± 1.786
2.905TyrPro: 2.905 ± 1.216
1.452TyrGln: 1.452 ± 0.939
0.726TyrArg: 0.726 ± 0.47
3.631TyrSer: 3.631 ± 0.94
1.452TyrThr: 1.452 ± 0.562
3.631TyrVal: 3.631 ± 1.203
0.726TyrTrp: 0.726 ± 0.706
0.726TyrTyr: 0.726 ± 0.751
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 6 proteins (1378 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski