bacterium A37T11

Taxonomy: cellular organisms; Bacteria; unclassified Bacteria

Average proteome isoelectric point is 6.83

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4337 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1H7WLM1|A0A1H7WLM1_9BACT L-rhamnose mutarotase OS=bacterium A37T11 OX=1855384 GN=SAMN05216436_102260 PE=4 SV=1
MM1 pKa = 7.19YY2 pKa = 7.77WTLEE6 pKa = 4.21LASHH10 pKa = 7.01LEE12 pKa = 4.08DD13 pKa = 4.93APWPATKK20 pKa = 10.47DD21 pKa = 3.38EE22 pKa = 5.13LIDD25 pKa = 3.42YY26 pKa = 7.68GIRR29 pKa = 11.84SGAPVEE35 pKa = 4.53VIEE38 pKa = 4.56NLQALEE44 pKa = 4.69DD45 pKa = 4.28DD46 pKa = 4.31GEE48 pKa = 4.31PYY50 pKa = 11.05EE51 pKa = 4.65NIEE54 pKa = 4.81EE55 pKa = 4.08IWPDD59 pKa = 3.85YY60 pKa = 7.47PTKK63 pKa = 10.94DD64 pKa = 3.05DD65 pKa = 4.15FFFNEE70 pKa = 4.51DD71 pKa = 3.17EE72 pKa = 4.46YY73 pKa = 11.99

Molecular weight: 8.6 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1H8E483|A0A1H8E483_9BACT Fusaric acid resistance protein-like OS=bacterium A37T11 OX=1855384 GN=SAMN05216436_11232 PE=4 SV=1
MM1 pKa = 7.92RR2 pKa = 11.84RR3 pKa = 11.84RR4 pKa = 11.84CAWSRR9 pKa = 11.84RR10 pKa = 11.84WMPLSILFKK19 pKa = 9.22TASIGIMPAGLQATSTRR36 pKa = 11.84IIAEE40 pKa = 3.97RR41 pKa = 11.84CQNLSITVNRR51 pKa = 11.84CEE53 pKa = 4.13VLSNICNTAICVYY66 pKa = 9.11VCSVINGDD74 pKa = 3.88HH75 pKa = 6.41LKK77 pKa = 10.87KK78 pKa = 10.62GGNYY82 pKa = 6.59EE83 pKa = 4.14TSIHH87 pKa = 6.54SIPGSSDD94 pKa = 2.57ATATGSIRR102 pKa = 11.84PAVVGMAGMDD112 pKa = 3.49PGIDD116 pKa = 3.56SRR118 pKa = 11.84AMGAINCTVPKK129 pKa = 10.03KK130 pKa = 10.59RR131 pKa = 11.84RR132 pKa = 11.84DD133 pKa = 3.41HH134 pKa = 5.88PAIRR138 pKa = 11.84PHH140 pKa = 6.05CWFNRR145 pKa = 11.84RR146 pKa = 11.84RR147 pKa = 11.84RR148 pKa = 11.84DD149 pKa = 3.24QCPDD153 pKa = 2.79LMSAHH158 pKa = 6.81RR159 pKa = 11.84RR160 pKa = 11.84QFCRR164 pKa = 11.84RR165 pKa = 11.84RR166 pKa = 11.84LAAHH170 pKa = 7.09AADD173 pKa = 3.51QKK175 pKa = 11.38KK176 pKa = 9.76FYY178 pKa = 11.13

Molecular weight: 19.93 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4337

0

4337

1547353

27

2511

356.8

40.07

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.41 ± 0.03

0.705 ± 0.011

5.417 ± 0.024

5.453 ± 0.037

4.729 ± 0.025

7.009 ± 0.033

1.973 ± 0.021

6.832 ± 0.031

6.305 ± 0.03

9.951 ± 0.037

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.162 ± 0.015

5.37 ± 0.04

4.013 ± 0.021

4.08 ± 0.021

4.452 ± 0.021

6.629 ± 0.035

5.599 ± 0.026

6.166 ± 0.024

1.313 ± 0.014

4.431 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski