Capybara microvirus Cap3_SP_446

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.17

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W8M5|A0A4P8W8M5_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_446 OX=2585458 PE=4 SV=1
MM1 pKa = 7.32VNNLYY6 pKa = 9.95TIYY9 pKa = 9.49DD10 pKa = 4.1TLSQRR15 pKa = 11.84YY16 pKa = 8.23GSVVAFASDD25 pKa = 2.99GMALFSIAQSYY36 pKa = 7.76QASGEE41 pKa = 4.04VLDD44 pKa = 5.31RR45 pKa = 11.84YY46 pKa = 8.29EE47 pKa = 4.14LCRR50 pKa = 11.84VGTVDD55 pKa = 3.13IEE57 pKa = 4.51TGVVEE62 pKa = 4.43SSGAPVRR69 pKa = 11.84LAWSSRR75 pKa = 11.84PQFEE79 pKa = 4.43QKK81 pKa = 8.11MTDD84 pKa = 3.24SVKK87 pKa = 10.96DD88 pKa = 3.82PLPVPPLPKK97 pKa = 10.06QQ98 pKa = 3.19

Molecular weight: 10.78 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W8M5|A0A4P8W8M5_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_446 OX=2585458 PE=4 SV=1
MM1 pKa = 7.2NVVAMTSAKK10 pKa = 9.85INKK13 pKa = 8.05PRR15 pKa = 11.84KK16 pKa = 7.93LPKK19 pKa = 9.37WLEE22 pKa = 4.06LEE24 pKa = 5.27DD25 pKa = 3.96IPEE28 pKa = 3.9TRR30 pKa = 11.84YY31 pKa = 9.87PYY33 pKa = 11.16ALYY36 pKa = 10.55NFRR39 pKa = 11.84FGAYY43 pKa = 9.81ALRR46 pKa = 11.84VEE48 pKa = 4.56YY49 pKa = 10.3NYY51 pKa = 10.52RR52 pKa = 11.84HH53 pKa = 5.95HH54 pKa = 6.49QFEE57 pKa = 4.98LIEE60 pKa = 4.51NGVSKK65 pKa = 10.17PHH67 pKa = 7.03LDD69 pKa = 3.46VLVLFSRR76 pKa = 11.84DD77 pKa = 3.06FKK79 pKa = 11.05YY80 pKa = 10.74IRR82 pKa = 11.84DD83 pKa = 3.67KK84 pKa = 11.05FLEE87 pKa = 4.33YY88 pKa = 10.48VDD90 pKa = 4.09KK91 pKa = 10.83FYY93 pKa = 10.98FAFRR97 pKa = 11.84CGCDD101 pKa = 3.14PADD104 pKa = 4.14LRR106 pKa = 11.84GG107 pKa = 3.32

Molecular weight: 12.88 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1612

98

586

268.7

30.19

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.491 ± 1.72

1.427 ± 0.735

7.382 ± 0.393

5.583 ± 0.814

4.777 ± 0.675

6.079 ± 0.534

1.303 ± 0.325

4.901 ± 0.314

6.266 ± 1.126

7.878 ± 1.019

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.419 ± 0.16

4.342 ± 0.264

4.032 ± 0.69

3.722 ± 0.609

5.583 ± 0.506

8.561 ± 0.772

4.777 ± 0.415

4.901 ± 0.811

0.868 ± 0.202

5.707 ± 0.441
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski