Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_446

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
8.07AlaAla: 8.07 ± 3.606
0.0AlaCys: 0.0 ± 0.0
7.449AlaAsp: 7.449 ± 2.451
5.587AlaGlu: 5.587 ± 2.217
5.587AlaPhe: 5.587 ± 1.795
8.07AlaGly: 8.07 ± 4.117
0.621AlaHis: 0.621 ± 0.538
3.724AlaIle: 3.724 ± 1.892
5.587AlaLys: 5.587 ± 1.423
8.07AlaLeu: 8.07 ± 1.425
2.483AlaMet: 2.483 ± 1.166
3.104AlaAsn: 3.104 ± 1.273
2.483AlaPro: 2.483 ± 0.708
3.724AlaGln: 3.724 ± 0.744
4.966AlaArg: 4.966 ± 1.261
9.311AlaSer: 9.311 ± 2.105
3.724AlaThr: 3.724 ± 1.89
4.345AlaVal: 4.345 ± 0.863
1.241AlaTrp: 1.241 ± 0.964
6.828AlaTyr: 6.828 ± 1.622
0.0AlaXaa: 0.0 ± 0.0
Cys
1.241CysAla: 1.241 ± 1.144
0.621CysCys: 0.621 ± 0.572
0.621CysAsp: 0.621 ± 0.85
0.621CysGlu: 0.621 ± 0.572
0.621CysPhe: 0.621 ± 0.572
3.104CysGly: 3.104 ± 1.178
0.621CysHis: 0.621 ± 0.408
1.862CysIle: 1.862 ± 1.716
0.621CysLys: 0.621 ± 0.572
0.0CysLeu: 0.0 ± 0.0
0.621CysMet: 0.621 ± 0.408
0.0CysAsn: 0.0 ± 0.0
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
2.483CysArg: 2.483 ± 1.238
0.0CysSer: 0.0 ± 0.0
0.0CysThr: 0.0 ± 0.0
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
1.241CysTyr: 1.241 ± 0.564
0.0CysXaa: 0.0 ± 0.0
Asp
4.966AspAla: 4.966 ± 1.88
1.241AspCys: 1.241 ± 1.144
3.724AspAsp: 3.724 ± 0.833
3.724AspGlu: 3.724 ± 1.792
5.587AspPhe: 5.587 ± 2.04
4.345AspGly: 4.345 ± 1.636
0.621AspHis: 0.621 ± 0.572
5.587AspIle: 5.587 ± 1.477
4.966AspLys: 4.966 ± 1.412
6.828AspLeu: 6.828 ± 2.176
0.0AspMet: 0.0 ± 0.0
4.966AspAsn: 4.966 ± 1.168
3.104AspPro: 3.104 ± 1.512
1.241AspGln: 1.241 ± 0.954
4.345AspArg: 4.345 ± 1.095
8.07AspSer: 8.07 ± 1.188
4.345AspThr: 4.345 ± 1.522
1.862AspVal: 1.862 ± 1.044
0.0AspTrp: 0.0 ± 0.0
4.345AspTyr: 4.345 ± 1.249
0.0AspXaa: 0.0 ± 0.0
Glu
4.966GluAla: 4.966 ± 2.276
1.241GluCys: 1.241 ± 1.144
3.724GluAsp: 3.724 ± 1.041
2.483GluGlu: 2.483 ± 1.457
2.483GluPhe: 2.483 ± 1.068
1.241GluGly: 1.241 ± 0.631
1.241GluHis: 1.241 ± 0.49
2.483GluIle: 2.483 ± 0.98
2.483GluLys: 2.483 ± 1.908
7.449GluLeu: 7.449 ± 1.973
1.241GluMet: 1.241 ± 0.84
3.724GluAsn: 3.724 ± 1.736
0.0GluPro: 0.0 ± 0.0
3.104GluGln: 3.104 ± 0.804
3.104GluArg: 3.104 ± 1.273
1.241GluSer: 1.241 ± 0.847
3.104GluThr: 3.104 ± 1.152
3.104GluVal: 3.104 ± 0.698
1.241GluTrp: 1.241 ± 0.49
6.207GluTyr: 6.207 ± 2.064
0.0GluXaa: 0.0 ± 0.0
Phe
6.207PheAla: 6.207 ± 1.96
0.0PheCys: 0.0 ± 0.0
4.966PheAsp: 4.966 ± 1.945
3.104PheGlu: 3.104 ± 1.26
1.862PhePhe: 1.862 ± 0.801
3.104PheGly: 3.104 ± 1.149
1.241PheHis: 1.241 ± 0.564
1.241PheIle: 1.241 ± 1.076
3.724PheLys: 3.724 ± 1.095
1.862PheLeu: 1.862 ± 0.839
1.862PheMet: 1.862 ± 0.437
1.862PheAsn: 1.862 ± 0.417
1.241PhePro: 1.241 ± 0.564
1.241PheGln: 1.241 ± 0.564
2.483PheArg: 2.483 ± 1.592
4.345PheSer: 4.345 ± 1.155
3.104PheThr: 3.104 ± 1.13
1.862PheVal: 1.862 ± 1.34
0.621PheTrp: 0.621 ± 0.408
1.862PheTyr: 1.862 ± 0.835
0.0PheXaa: 0.0 ± 0.0
Gly
5.587GlyAla: 5.587 ± 2.337
1.241GlyCys: 1.241 ± 0.86
4.345GlyAsp: 4.345 ± 1.144
3.724GlyGlu: 3.724 ± 1.23
1.241GlyPhe: 1.241 ± 1.076
1.862GlyGly: 1.862 ± 0.945
0.621GlyHis: 0.621 ± 0.408
3.104GlyIle: 3.104 ± 1.167
2.483GlyLys: 2.483 ± 0.915
7.449GlyLeu: 7.449 ± 1.569
3.104GlyMet: 3.104 ± 0.949
2.483GlyAsn: 2.483 ± 0.98
0.0GlyPro: 0.0 ± 0.0
0.621GlyGln: 0.621 ± 0.572
4.345GlyArg: 4.345 ± 1.249
8.69GlySer: 8.69 ± 1.66
3.104GlyThr: 3.104 ± 1.179
3.724GlyVal: 3.724 ± 1.354
0.0GlyTrp: 0.0 ± 0.0
2.483GlyTyr: 2.483 ± 1.632
0.0GlyXaa: 0.0 ± 0.0
His
0.621HisAla: 0.621 ± 0.538
0.621HisCys: 0.621 ± 0.572
0.0HisAsp: 0.0 ± 0.0
0.0HisGlu: 0.0 ± 0.0
0.621HisPhe: 0.621 ± 0.572
1.241HisGly: 1.241 ± 0.816
0.621HisHis: 0.621 ± 0.85
1.241HisIle: 1.241 ± 0.564
0.0HisLys: 0.0 ± 0.0
1.241HisLeu: 1.241 ± 0.928
1.241HisMet: 1.241 ± 0.49
0.0HisAsn: 0.0 ± 0.0
0.621HisPro: 0.621 ± 0.572
1.241HisGln: 1.241 ± 0.928
0.621HisArg: 0.621 ± 0.538
0.621HisSer: 0.621 ± 0.408
1.241HisThr: 1.241 ± 0.816
0.621HisVal: 0.621 ± 0.776
0.0HisTrp: 0.0 ± 0.0
0.621HisTyr: 0.621 ± 0.572
0.0HisXaa: 0.0 ± 0.0
Ile
3.724IleAla: 3.724 ± 1.089
0.621IleCys: 0.621 ± 0.408
5.587IleAsp: 5.587 ± 1.864
3.724IleGlu: 3.724 ± 1.152
0.621IlePhe: 0.621 ± 0.538
1.241IleGly: 1.241 ± 0.49
0.621IleHis: 0.621 ± 0.572
1.241IleIle: 1.241 ± 0.49
4.966IleLys: 4.966 ± 2.33
1.862IleLeu: 1.862 ± 1.224
1.862IleMet: 1.862 ± 1.024
1.862IleAsn: 1.862 ± 0.839
3.104IlePro: 3.104 ± 1.382
1.241IleGln: 1.241 ± 0.631
3.104IleArg: 3.104 ± 1.178
6.207IleSer: 6.207 ± 2.816
3.104IleThr: 3.104 ± 1.513
1.241IleVal: 1.241 ± 0.816
0.621IleTrp: 0.621 ± 0.572
2.483IleTyr: 2.483 ± 1.11
0.0IleXaa: 0.0 ± 0.0
Lys
4.345LysAla: 4.345 ± 1.128
0.0LysCys: 0.0 ± 0.0
6.207LysAsp: 6.207 ± 1.827
3.724LysGlu: 3.724 ± 2.091
4.345LysPhe: 4.345 ± 1.398
1.241LysGly: 1.241 ± 0.998
1.241LysHis: 1.241 ± 0.564
3.104LysIle: 3.104 ± 0.634
6.828LysLys: 6.828 ± 2.764
4.345LysLeu: 4.345 ± 1.528
0.621LysMet: 0.621 ± 0.821
3.724LysAsn: 3.724 ± 1.452
3.724LysPro: 3.724 ± 1.709
3.724LysGln: 3.724 ± 2.119
2.483LysArg: 2.483 ± 0.915
2.483LysSer: 2.483 ± 0.79
3.104LysThr: 3.104 ± 0.704
2.483LysVal: 2.483 ± 1.726
1.241LysTrp: 1.241 ± 0.928
3.724LysTyr: 3.724 ± 1.041
0.0LysXaa: 0.0 ± 0.0
Leu
7.449LeuAla: 7.449 ± 2.218
1.862LeuCys: 1.862 ± 0.893
4.966LeuAsp: 4.966 ± 1.472
8.69LeuGlu: 8.69 ± 1.974
4.345LeuPhe: 4.345 ± 1.155
3.724LeuGly: 3.724 ± 1.224
0.621LeuHis: 0.621 ± 0.572
3.724LeuIle: 3.724 ± 0.71
2.483LeuLys: 2.483 ± 1.384
3.104LeuLeu: 3.104 ± 1.446
1.241LeuMet: 1.241 ± 0.816
4.966LeuAsn: 4.966 ± 2.694
6.828LeuPro: 6.828 ± 2.949
2.483LeuGln: 2.483 ± 0.98
1.862LeuArg: 1.862 ± 1.661
8.69LeuSer: 8.69 ± 2.471
5.587LeuThr: 5.587 ± 1.909
2.483LeuVal: 2.483 ± 0.995
0.621LeuTrp: 0.621 ± 0.408
3.104LeuTyr: 3.104 ± 1.339
0.0LeuXaa: 0.0 ± 0.0
Met
2.483MetAla: 2.483 ± 0.895
0.0MetCys: 0.0 ± 0.0
0.621MetAsp: 0.621 ± 0.538
0.621MetGlu: 0.621 ± 0.776
1.241MetPhe: 1.241 ± 0.816
1.862MetGly: 1.862 ± 0.945
0.621MetHis: 0.621 ± 0.538
1.241MetIle: 1.241 ± 0.564
3.104MetLys: 3.104 ± 1.538
0.0MetLeu: 0.0 ± 0.0
0.0MetMet: 0.0 ± 0.0
2.483MetAsn: 2.483 ± 1.166
3.104MetPro: 3.104 ± 1.446
0.0MetGln: 0.0 ± 0.0
0.621MetArg: 0.621 ± 0.572
1.862MetSer: 1.862 ± 0.417
2.483MetThr: 2.483 ± 1.441
1.241MetVal: 1.241 ± 0.847
0.0MetTrp: 0.0 ± 0.0
0.621MetTyr: 0.621 ± 0.408
0.0MetXaa: 0.0 ± 0.0
Asn
3.724AsnAla: 3.724 ± 0.836
0.621AsnCys: 0.621 ± 0.408
2.483AsnAsp: 2.483 ± 1.607
1.241AsnGlu: 1.241 ± 0.631
3.104AsnPhe: 3.104 ± 1.233
2.483AsnGly: 2.483 ± 1.149
0.621AsnHis: 0.621 ± 0.572
1.862AsnIle: 1.862 ± 0.724
3.724AsnLys: 3.724 ± 1.186
5.587AsnLeu: 5.587 ± 1.696
1.241AsnMet: 1.241 ± 0.487
2.483AsnAsn: 2.483 ± 0.708
0.621AsnPro: 0.621 ± 0.408
0.621AsnGln: 0.621 ± 0.538
2.483AsnArg: 2.483 ± 0.98
2.483AsnSer: 2.483 ± 1.509
1.862AsnThr: 1.862 ± 0.417
2.483AsnVal: 2.483 ± 1.166
0.0AsnTrp: 0.0 ± 0.0
3.724AsnTyr: 3.724 ± 0.71
0.0AsnXaa: 0.0 ± 0.0
Pro
2.483ProAla: 2.483 ± 1.332
1.862ProCys: 1.862 ± 1.716
1.862ProAsp: 1.862 ± 0.417
1.241ProGlu: 1.241 ± 0.86
3.724ProPhe: 3.724 ± 0.987
1.241ProGly: 1.241 ± 0.816
1.241ProHis: 1.241 ± 1.086
3.104ProIle: 3.104 ± 1.324
1.241ProLys: 1.241 ± 1.397
3.724ProLeu: 3.724 ± 1.428
0.0ProMet: 0.0 ± 0.0
2.483ProAsn: 2.483 ± 0.98
1.862ProPro: 1.862 ± 1.356
3.104ProGln: 3.104 ± 1.179
1.241ProArg: 1.241 ± 0.928
2.483ProSer: 2.483 ± 0.531
1.862ProThr: 1.862 ± 1.06
3.104ProVal: 3.104 ± 1.557
0.0ProTrp: 0.0 ± 0.0
2.483ProTyr: 2.483 ± 0.937
0.0ProXaa: 0.0 ± 0.0
Gln
3.724GlnAla: 3.724 ± 0.629
0.0GlnCys: 0.0 ± 0.0
2.483GlnAsp: 2.483 ± 0.531
1.862GlnGlu: 1.862 ± 1.654
1.862GlnPhe: 1.862 ± 1.421
1.862GlnGly: 1.862 ± 1.224
0.0GlnHis: 0.0 ± 0.0
1.862GlnIle: 1.862 ± 0.79
4.345GlnLys: 4.345 ± 0.994
2.483GlnLeu: 2.483 ± 1.068
0.621GlnMet: 0.621 ± 0.752
0.621GlnAsn: 0.621 ± 0.572
1.241GlnPro: 1.241 ± 0.49
2.483GlnGln: 2.483 ± 1.457
3.724GlnArg: 3.724 ± 0.744
2.483GlnSer: 2.483 ± 1.16
1.241GlnThr: 1.241 ± 0.564
2.483GlnVal: 2.483 ± 1.138
0.0GlnTrp: 0.0 ± 0.0
1.862GlnTyr: 1.862 ± 0.945
0.0GlnXaa: 0.0 ± 0.0
Arg
4.966ArgAla: 4.966 ± 2.151
0.621ArgCys: 0.621 ± 0.85
4.345ArgAsp: 4.345 ± 1.398
5.587ArgGlu: 5.587 ± 1.611
2.483ArgPhe: 2.483 ± 0.995
3.104ArgGly: 3.104 ± 0.963
0.621ArgHis: 0.621 ± 0.85
1.862ArgIle: 1.862 ± 0.417
4.345ArgLys: 4.345 ± 1.898
4.345ArgLeu: 4.345 ± 1.812
1.862ArgMet: 1.862 ± 0.801
1.862ArgAsn: 1.862 ± 0.724
1.862ArgPro: 1.862 ± 1.137
3.724ArgGln: 3.724 ± 1.139
3.104ArgArg: 3.104 ± 2.399
3.724ArgSer: 3.724 ± 1.414
0.0ArgThr: 0.0 ± 0.0
3.104ArgVal: 3.104 ± 1.339
0.621ArgTrp: 0.621 ± 0.538
3.724ArgTyr: 3.724 ± 1.886
0.0ArgXaa: 0.0 ± 0.0
Ser
8.69SerAla: 8.69 ± 2.916
1.241SerCys: 1.241 ± 1.144
6.207SerAsp: 6.207 ± 1.267
3.724SerGlu: 3.724 ± 0.836
1.862SerPhe: 1.862 ± 1.224
11.794SerGly: 11.794 ± 2.204
1.862SerHis: 1.862 ± 0.801
3.724SerIle: 3.724 ± 1.109
3.724SerLys: 3.724 ± 1.572
4.345SerLeu: 4.345 ± 1.249
1.241SerMet: 1.241 ± 0.49
1.241SerAsn: 1.241 ± 0.816
3.724SerPro: 3.724 ± 1.224
1.241SerGln: 1.241 ± 0.847
4.966SerArg: 4.966 ± 1.024
11.794SerSer: 11.794 ± 2.82
3.104SerThr: 3.104 ± 0.704
7.449SerVal: 7.449 ± 1.944
0.621SerTrp: 0.621 ± 0.572
3.104SerTyr: 3.104 ± 0.698
0.0SerXaa: 0.0 ± 0.0
Thr
8.07ThrAla: 8.07 ± 1.738
0.0ThrCys: 0.0 ± 0.0
4.345ThrAsp: 4.345 ± 1.671
0.621ThrGlu: 0.621 ± 0.572
1.241ThrPhe: 1.241 ± 0.564
3.104ThrGly: 3.104 ± 1.179
0.0ThrHis: 0.0 ± 0.0
3.724ThrIle: 3.724 ± 0.629
1.241ThrLys: 1.241 ± 1.076
4.345ThrLeu: 4.345 ± 1.615
0.621ThrMet: 0.621 ± 0.408
0.621ThrAsn: 0.621 ± 0.408
2.483ThrPro: 2.483 ± 1.607
1.241ThrGln: 1.241 ± 0.49
4.345ThrArg: 4.345 ± 1.414
3.104ThrSer: 3.104 ± 1.141
3.104ThrThr: 3.104 ± 0.708
1.862ThrVal: 1.862 ± 1.046
0.621ThrTrp: 0.621 ± 0.572
3.104ThrTyr: 3.104 ± 1.238
0.0ThrXaa: 0.0 ± 0.0
Val
6.207ValAla: 6.207 ± 0.972
0.0ValCys: 0.0 ± 0.0
6.207ValAsp: 6.207 ± 0.662
2.483ValGlu: 2.483 ± 1.328
2.483ValPhe: 2.483 ± 1.996
3.724ValGly: 3.724 ± 1.969
0.0ValHis: 0.0 ± 0.0
0.621ValIle: 0.621 ± 0.538
3.104ValLys: 3.104 ± 2.318
6.207ValLeu: 6.207 ± 2.322
1.862ValMet: 1.862 ± 0.891
1.862ValAsn: 1.862 ± 0.921
3.724ValPro: 3.724 ± 0.629
0.621ValGln: 0.621 ± 0.408
2.483ValArg: 2.483 ± 1.343
1.862ValSer: 1.862 ± 0.835
1.241ValThr: 1.241 ± 0.631
3.104ValVal: 3.104 ± 1.978
0.621ValTrp: 0.621 ± 0.408
0.621ValTyr: 0.621 ± 0.408
0.0ValXaa: 0.0 ± 0.0
Trp
0.621TrpAla: 0.621 ± 0.538
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.621TrpGlu: 0.621 ± 0.408
0.0TrpPhe: 0.0 ± 0.0
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.621TrpIle: 0.621 ± 0.572
0.621TrpLys: 0.621 ± 0.572
0.621TrpLeu: 0.621 ± 0.85
0.0TrpMet: 0.0 ± 0.0
0.621TrpAsn: 0.621 ± 0.572
0.0TrpPro: 0.0 ± 0.0
1.862TrpGln: 1.862 ± 0.724
0.0TrpArg: 0.0 ± 0.0
1.862TrpSer: 1.862 ± 0.893
0.621TrpThr: 0.621 ± 0.408
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.621TrpTyr: 0.621 ± 0.572
0.0TrpXaa: 0.0 ± 0.0
Tyr
6.828TyrAla: 6.828 ± 1.328
2.483TyrCys: 2.483 ± 1.14
3.724TyrAsp: 3.724 ± 1.844
2.483TyrGlu: 2.483 ± 1.068
2.483TyrPhe: 2.483 ± 0.913
2.483TyrGly: 2.483 ± 1.238
0.0TyrHis: 0.0 ± 0.0
3.104TyrIle: 3.104 ± 0.963
3.104TyrLys: 3.104 ± 1.415
4.966TyrLeu: 4.966 ± 1.578
1.862TyrMet: 1.862 ± 0.417
2.483TyrAsn: 2.483 ± 1.613
0.621TyrPro: 0.621 ± 0.85
3.724TyrGln: 3.724 ± 1.168
3.104TyrArg: 3.104 ± 0.872
4.345TyrSer: 4.345 ± 1.134
1.862TyrThr: 1.862 ± 0.893
2.483TyrVal: 2.483 ± 0.665
0.621TyrTrp: 0.621 ± 0.408
4.345TyrTyr: 4.345 ± 0.996
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 6 proteins (1612 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski