Paramesorhizobium deserti

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Phyllobacteriaceae; Paramesorhizobium

Average proteome isoelectric point is 6.48

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4946 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A135HY13|A0A135HY13_9RHIZ LysM domain-containing protein OS=Paramesorhizobium deserti OX=1494590 GN=ATN84_24220 PE=4 SV=1
EEE2 pKa = 4.55EEE4 pKa = 4.14GTLRR8 pKa = 11.84TYYY11 pKa = 10.87EEE13 pKa = 4.69RR14 pKa = 11.84FQWDDD19 pKa = 3.58NDDD22 pKa = 2.84DDD24 pKa = 3.94AYYY27 pKa = 10.45EEE29 pKa = 4.54DDD31 pKa = 3.35DD32 pKa = 3.72TLNFAYYY39 pKa = 9.67EEE41 pKa = 4.18GGLRR45 pKa = 11.84IGKKK49 pKa = 9.54DD50 pKa = 3.21EE51 pKa = 4.22AFRR54 pKa = 11.84TFLGYYY60 pKa = 10.54GNVINDDD67 pKa = 3.95DD68 pKa = 3.74IEEE71 pKa = 4.17LNYYY75 pKa = 8.18DD76 pKa = 3.57TLISYYY82 pKa = 7.51FTGGNGISAILSAEEE97 pKa = 4.0GEEE100 pKa = 4.55DDD102 pKa = 3.92YY103 pKa = 10.83INDDD107 pKa = 4.64YY108 pKa = 10.61PHHH111 pKa = 5.85VGGLKKK117 pKa = 9.02AQGWGSIGAVVGYYY131 pKa = 10.49DD132 pKa = 3.61VIEEE136 pKa = 4.21EE137 pKa = 4.24YY138 pKa = 10.52IKKK141 pKa = 10.67RR142 pKa = 11.84VDDD145 pKa = 4.42NVSDDD150 pKa = 4.16FSVFVMGAWQSDDD163 pKa = 3.66EEE165 pKa = 4.41INFRR169 pKa = 11.84EEE171 pKa = 3.95FYYY174 pKa = 11.22SWGGDDD180 pKa = 2.66AAWVGASYYY189 pKa = 11.55KK190 pKa = 9.98TDDD193 pKa = 3.4KK194 pKa = 10.81TFNAQVSYYY203 pKa = 11.73DD204 pKa = 4.61DD205 pKa = 4.29DDD207 pKa = 4.04LAVAANVAYYY217 pKa = 9.79EE218 pKa = 4.07VPGFTITPEEE228 pKa = 3.56LYYY231 pKa = 11.18YY232 pKa = 10.5KK233 pKa = 10.63DD234 pKa = 4.6VDDD237 pKa = 4.67DD238 pKa = 4.26SPAGVITQSDDD249 pKa = 4.2DD250 pKa = 2.64WGGMIRR256 pKa = 11.84FQRR259 pKa = 11.84SF

Molecular weight: 28.74 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A135I065|A0A135I065_9RHIZ Sugar ABC transporter permease OS=Paramesorhizobium deserti OX=1494590 GN=ATN84_03530 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.27QPSKK9 pKa = 9.73LVRR12 pKa = 11.84KK13 pKa = 8.95RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.63GFRR19 pKa = 11.84SRR21 pKa = 11.84MATPGGRR28 pKa = 11.84KK29 pKa = 9.26VIAARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.03RR41 pKa = 11.84LSAA44 pKa = 4.03

Molecular weight: 5.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4946

0

4946

1548363

29

3682

313.1

34.11

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.825 ± 0.041

0.779 ± 0.012

5.584 ± 0.031

5.945 ± 0.033

3.919 ± 0.023

8.496 ± 0.043

2.038 ± 0.018

5.871 ± 0.028

3.591 ± 0.031

10.019 ± 0.039

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.555 ± 0.017

2.821 ± 0.023

5.02 ± 0.027

3.018 ± 0.019

6.842 ± 0.038

5.487 ± 0.028

5.269 ± 0.034

7.254 ± 0.029

1.321 ± 0.017

2.345 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski