Amino acid dipepetide frequency for Wickerhamomyces anomalus (strain ATCC 58044 / CBS 1984 / NCYC 433 / NRRL Y-366-8) (Yeast) (Hansenula anomala)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.105AlaAla: 4.105 ± 0.067
0.589AlaCys: 0.589 ± 0.017
2.628AlaAsp: 2.628 ± 0.034
3.133AlaGlu: 3.133 ± 0.041
2.475AlaPhe: 2.475 ± 0.038
3.278AlaGly: 3.278 ± 0.048
1.034AlaHis: 1.034 ± 0.019
4.018AlaIle: 4.018 ± 0.044
4.281AlaLys: 4.281 ± 0.045
5.579AlaLeu: 5.579 ± 0.058
0.999AlaMet: 0.999 ± 0.024
2.845AlaAsn: 2.845 ± 0.037
2.533AlaPro: 2.533 ± 0.043
2.237AlaGln: 2.237 ± 0.032
2.272AlaArg: 2.272 ± 0.036
4.728AlaSer: 4.728 ± 0.051
3.34AlaThr: 3.34 ± 0.045
3.298AlaVal: 3.298 ± 0.04
0.503AlaTrp: 0.503 ± 0.014
1.734AlaTyr: 1.734 ± 0.026
0.0AlaXaa: 0.0 ± 0.0
Cys
0.561CysAla: 0.561 ± 0.014
0.222CysCys: 0.222 ± 0.01
0.555CysAsp: 0.555 ± 0.016
0.5CysGlu: 0.5 ± 0.015
0.627CysPhe: 0.627 ± 0.016
0.709CysGly: 0.709 ± 0.019
0.256CysHis: 0.256 ± 0.011
0.699CysIle: 0.699 ± 0.016
0.537CysLys: 0.537 ± 0.016
1.061CysLeu: 1.061 ± 0.021
0.17CysMet: 0.17 ± 0.007
0.415CysAsn: 0.415 ± 0.013
0.425CysPro: 0.425 ± 0.014
0.33CysGln: 0.33 ± 0.01
0.363CysArg: 0.363 ± 0.012
0.82CysSer: 0.82 ± 0.018
0.497CysThr: 0.497 ± 0.014
0.628CysVal: 0.628 ± 0.017
0.133CysTrp: 0.133 ± 0.008
0.37CysTyr: 0.37 ± 0.011
0.0CysXaa: 0.0 ± 0.0
Asp
3.108AspAla: 3.108 ± 0.039
0.507AspCys: 0.507 ± 0.013
4.992AspAsp: 4.992 ± 0.065
5.75AspGlu: 5.75 ± 0.066
2.988AspPhe: 2.988 ± 0.033
3.074AspGly: 3.074 ± 0.035
1.241AspHis: 1.241 ± 0.024
4.112AspIle: 4.112 ± 0.043
3.568AspLys: 3.568 ± 0.034
5.997AspLeu: 5.997 ± 0.05
0.861AspMet: 0.861 ± 0.017
2.83AspAsn: 2.83 ± 0.036
2.608AspPro: 2.608 ± 0.033
2.289AspGln: 2.289 ± 0.028
1.963AspArg: 1.963 ± 0.03
4.676AspSer: 4.676 ± 0.055
2.627AspThr: 2.627 ± 0.03
3.598AspVal: 3.598 ± 0.037
0.662AspTrp: 0.662 ± 0.016
2.428AspTyr: 2.428 ± 0.035
0.0AspXaa: 0.0 ± 0.0
Glu
3.688GluAla: 3.688 ± 0.056
0.484GluCys: 0.484 ± 0.014
4.585GluAsp: 4.585 ± 0.062
6.274GluGlu: 6.274 ± 0.076
3.13GluPhe: 3.13 ± 0.036
2.887GluGly: 2.887 ± 0.036
1.272GluHis: 1.272 ± 0.022
4.828GluIle: 4.828 ± 0.047
5.283GluLys: 5.283 ± 0.058
6.876GluLeu: 6.876 ± 0.056
1.166GluMet: 1.166 ± 0.02
4.072GluAsn: 4.072 ± 0.044
2.177GluPro: 2.177 ± 0.033
2.714GluGln: 2.714 ± 0.032
2.807GluArg: 2.807 ± 0.035
5.025GluSer: 5.025 ± 0.05
3.588GluThr: 3.588 ± 0.04
3.754GluVal: 3.754 ± 0.034
0.666GluTrp: 0.666 ± 0.019
2.233GluTyr: 2.233 ± 0.028
0.0GluXaa: 0.0 ± 0.0
Phe
2.656PheAla: 2.656 ± 0.035
0.481PheCys: 0.481 ± 0.014
2.979PheAsp: 2.979 ± 0.038
3.201PheGlu: 3.201 ± 0.043
2.339PhePhe: 2.339 ± 0.037
3.058PheGly: 3.058 ± 0.044
0.999PheHis: 0.999 ± 0.02
3.508PheIle: 3.508 ± 0.044
3.745PheLys: 3.745 ± 0.041
4.401PheLeu: 4.401 ± 0.052
0.829PheMet: 0.829 ± 0.018
3.014PheAsn: 3.014 ± 0.037
1.813PhePro: 1.813 ± 0.025
2.043PheGln: 2.043 ± 0.027
1.568PheArg: 1.568 ± 0.026
3.411PheSer: 3.411 ± 0.04
2.652PheThr: 2.652 ± 0.031
2.72PheVal: 2.72 ± 0.036
0.579PheTrp: 0.579 ± 0.017
1.681PheTyr: 1.681 ± 0.029
0.0PheXaa: 0.0 ± 0.0
Gly
3.358GlyAla: 3.358 ± 0.051
0.63GlyCys: 0.63 ± 0.015
3.042GlyAsp: 3.042 ± 0.041
3.273GlyGlu: 3.273 ± 0.038
2.941GlyPhe: 2.941 ± 0.039
3.775GlyGly: 3.775 ± 0.07
1.119GlyHis: 1.119 ± 0.022
3.708GlyIle: 3.708 ± 0.047
3.561GlyLys: 3.561 ± 0.039
5.289GlyLeu: 5.289 ± 0.05
0.859GlyMet: 0.859 ± 0.021
2.598GlyAsn: 2.598 ± 0.035
1.684GlyPro: 1.684 ± 0.032
1.703GlyGln: 1.703 ± 0.027
2.073GlyArg: 2.073 ± 0.035
4.739GlySer: 4.739 ± 0.056
2.832GlyThr: 2.832 ± 0.037
3.66GlyVal: 3.66 ± 0.043
0.707GlyTrp: 0.707 ± 0.016
2.15GlyTyr: 2.15 ± 0.033
0.0GlyXaa: 0.0 ± 0.0
His
0.93HisAla: 0.93 ± 0.018
0.252HisCys: 0.252 ± 0.009
1.207HisAsp: 1.207 ± 0.022
1.268HisGlu: 1.268 ± 0.022
1.0HisPhe: 1.0 ± 0.02
1.175HisGly: 1.175 ± 0.023
0.786HisHis: 0.786 ± 0.024
1.358HisIle: 1.358 ± 0.023
1.295HisLys: 1.295 ± 0.023
2.082HisLeu: 2.082 ± 0.029
0.304HisMet: 0.304 ± 0.01
1.031HisAsn: 1.031 ± 0.023
1.086HisPro: 1.086 ± 0.019
0.959HisGln: 0.959 ± 0.02
0.897HisArg: 0.897 ± 0.022
1.714HisSer: 1.714 ± 0.029
0.963HisThr: 0.963 ± 0.018
1.125HisVal: 1.125 ± 0.022
0.215HisTrp: 0.215 ± 0.009
0.829HisTyr: 0.829 ± 0.016
0.0HisXaa: 0.0 ± 0.0
Ile
3.949IleAla: 3.949 ± 0.046
0.745IleCys: 0.745 ± 0.02
4.509IleAsp: 4.509 ± 0.051
4.587IleGlu: 4.587 ± 0.043
3.203IlePhe: 3.203 ± 0.043
3.965IleGly: 3.965 ± 0.049
1.475IleHis: 1.475 ± 0.022
4.73IleIle: 4.73 ± 0.05
5.021IleLys: 5.021 ± 0.045
6.503IleLeu: 6.503 ± 0.062
1.175IleMet: 1.175 ± 0.021
4.08IleAsn: 4.08 ± 0.045
3.576IlePro: 3.576 ± 0.036
2.592IleGln: 2.592 ± 0.032
2.643IleArg: 2.643 ± 0.033
5.955IleSer: 5.955 ± 0.054
3.976IleThr: 3.976 ± 0.041
4.058IleVal: 4.058 ± 0.038
0.778IleTrp: 0.778 ± 0.017
2.304IleTyr: 2.304 ± 0.03
0.0IleXaa: 0.0 ± 0.0
Lys
3.935LysAla: 3.935 ± 0.049
0.601LysCys: 0.601 ± 0.015
4.524LysAsp: 4.524 ± 0.044
5.372LysGlu: 5.372 ± 0.053
3.533LysPhe: 3.533 ± 0.041
3.161LysGly: 3.161 ± 0.036
1.478LysHis: 1.478 ± 0.021
5.386LysIle: 5.386 ± 0.05
6.428LysLys: 6.428 ± 0.072
7.387LysLeu: 7.387 ± 0.063
1.168LysMet: 1.168 ± 0.023
4.378LysAsn: 4.378 ± 0.044
3.142LysPro: 3.142 ± 0.04
2.877LysGln: 2.877 ± 0.039
3.563LysArg: 3.563 ± 0.045
5.76LysSer: 5.76 ± 0.053
4.099LysThr: 4.099 ± 0.042
4.271LysVal: 4.271 ± 0.046
0.76LysTrp: 0.76 ± 0.017
2.637LysTyr: 2.637 ± 0.032
0.0LysXaa: 0.0 ± 0.0
Leu
5.443LeuAla: 5.443 ± 0.052
0.957LeuCys: 0.957 ± 0.02
5.505LeuAsp: 5.505 ± 0.052
6.172LeuGlu: 6.172 ± 0.062
4.389LeuPhe: 4.389 ± 0.051
4.932LeuGly: 4.932 ± 0.047
1.87LeuHis: 1.87 ± 0.024
6.783LeuIle: 6.783 ± 0.067
8.157LeuLys: 8.157 ± 0.071
9.237LeuLeu: 9.237 ± 0.086
1.696LeuMet: 1.696 ± 0.022
6.017LeuAsn: 6.017 ± 0.054
4.312LeuPro: 4.312 ± 0.044
3.947LeuGln: 3.947 ± 0.046
4.013LeuArg: 4.013 ± 0.043
8.399LeuSer: 8.399 ± 0.067
5.426LeuThr: 5.426 ± 0.049
5.546LeuVal: 5.546 ± 0.045
0.911LeuTrp: 0.911 ± 0.021
3.14LeuTyr: 3.14 ± 0.035
0.0LeuXaa: 0.0 ± 0.0
Met
1.074MetAla: 1.074 ± 0.022
0.2MetCys: 0.2 ± 0.009
0.954MetAsp: 0.954 ± 0.018
0.928MetGlu: 0.928 ± 0.018
0.764MetPhe: 0.764 ± 0.019
0.991MetGly: 0.991 ± 0.019
0.212MetHis: 0.212 ± 0.01
1.208MetIle: 1.208 ± 0.022
1.243MetLys: 1.243 ± 0.023
1.431MetLeu: 1.431 ± 0.024
0.376MetMet: 0.376 ± 0.016
1.057MetAsn: 1.057 ± 0.023
0.564MetPro: 0.564 ± 0.015
0.445MetGln: 0.445 ± 0.014
0.632MetArg: 0.632 ± 0.016
1.732MetSer: 1.732 ± 0.023
0.969MetThr: 0.969 ± 0.018
0.979MetVal: 0.979 ± 0.019
0.135MetTrp: 0.135 ± 0.007
0.449MetTyr: 0.449 ± 0.013
0.0MetXaa: 0.0 ± 0.0
Asn
2.921AsnAla: 2.921 ± 0.032
0.561AsnCys: 0.561 ± 0.017
3.892AsnAsp: 3.892 ± 0.043
4.122AsnGlu: 4.122 ± 0.043
2.797AsnPhe: 2.797 ± 0.039
3.329AsnGly: 3.329 ± 0.046
1.28AsnHis: 1.28 ± 0.025
3.726AsnIle: 3.726 ± 0.04
3.867AsnLys: 3.867 ± 0.039
5.426AsnLeu: 5.426 ± 0.057
0.831AsnMet: 0.831 ± 0.017
4.056AsnAsn: 4.056 ± 0.073
2.551AsnPro: 2.551 ± 0.032
2.386AsnGln: 2.386 ± 0.035
1.878AsnArg: 1.878 ± 0.027
4.99AsnSer: 4.99 ± 0.054
2.975AsnThr: 2.975 ± 0.038
3.259AsnVal: 3.259 ± 0.033
0.656AsnTrp: 0.656 ± 0.016
2.224AsnTyr: 2.224 ± 0.032
0.0AsnXaa: 0.0 ± 0.0
Pro
2.224ProAla: 2.224 ± 0.037
0.3ProCys: 0.3 ± 0.012
2.149ProAsp: 2.149 ± 0.029
3.08ProGlu: 3.08 ± 0.038
2.006ProPhe: 2.006 ± 0.028
2.008ProGly: 2.008 ± 0.032
0.799ProHis: 0.799 ± 0.017
3.123ProIle: 3.123 ± 0.039
3.392ProLys: 3.392 ± 0.041
3.89ProLeu: 3.89 ± 0.038
0.616ProMet: 0.616 ± 0.016
2.601ProAsn: 2.601 ± 0.031
2.492ProPro: 2.492 ± 0.064
2.023ProGln: 2.023 ± 0.044
1.606ProArg: 1.606 ± 0.027
4.097ProSer: 4.097 ± 0.055
2.798ProThr: 2.798 ± 0.039
2.561ProVal: 2.561 ± 0.038
0.431ProTrp: 0.431 ± 0.012
1.393ProTyr: 1.393 ± 0.025
0.0ProXaa: 0.0 ± 0.0
Gln
2.152GlnAla: 2.152 ± 0.035
0.335GlnCys: 0.335 ± 0.012
2.281GlnAsp: 2.281 ± 0.029
2.627GlnGlu: 2.627 ± 0.035
1.859GlnPhe: 1.859 ± 0.027
1.781GlnGly: 1.781 ± 0.024
0.924GlnHis: 0.924 ± 0.021
2.681GlnIle: 2.681 ± 0.032
2.756GlnLys: 2.756 ± 0.038
4.021GlnLeu: 4.021 ± 0.044
0.656GlnMet: 0.656 ± 0.018
2.325GlnAsn: 2.325 ± 0.031
1.845GlnPro: 1.845 ± 0.041
3.322GlnGln: 3.322 ± 0.115
1.827GlnArg: 1.827 ± 0.026
3.132GlnSer: 3.132 ± 0.039
2.069GlnThr: 2.069 ± 0.031
2.267GlnVal: 2.267 ± 0.028
0.378GlnTrp: 0.378 ± 0.013
1.384GlnTyr: 1.384 ± 0.024
0.0GlnXaa: 0.0 ± 0.0
Arg
2.291ArgAla: 2.291 ± 0.032
0.413ArgCys: 0.413 ± 0.013
2.241ArgAsp: 2.241 ± 0.03
2.521ArgGlu: 2.521 ± 0.036
1.934ArgPhe: 1.934 ± 0.032
2.049ArgGly: 2.049 ± 0.037
0.858ArgHis: 0.858 ± 0.02
2.719ArgIle: 2.719 ± 0.033
3.115ArgLys: 3.115 ± 0.038
3.888ArgLeu: 3.888 ± 0.043
0.694ArgMet: 0.694 ± 0.018
2.15ArgAsn: 2.15 ± 0.029
1.603ArgPro: 1.603 ± 0.028
1.569ArgGln: 1.569 ± 0.026
2.394ArgArg: 2.394 ± 0.036
3.333ArgSer: 3.333 ± 0.043
2.041ArgThr: 2.041 ± 0.029
2.327ArgVal: 2.327 ± 0.029
0.434ArgTrp: 0.434 ± 0.015
1.507ArgTyr: 1.507 ± 0.026
0.0ArgXaa: 0.0 ± 0.0
Ser
4.437SerAla: 4.437 ± 0.055
0.782SerCys: 0.782 ± 0.019
4.414SerAsp: 4.414 ± 0.053
4.568SerGlu: 4.568 ± 0.047
4.056SerPhe: 4.056 ± 0.041
4.381SerGly: 4.381 ± 0.051
1.622SerHis: 1.622 ± 0.023
6.347SerIle: 6.347 ± 0.066
6.687SerLys: 6.687 ± 0.061
8.145SerLeu: 8.145 ± 0.061
1.33SerMet: 1.33 ± 0.021
5.347SerAsn: 5.347 ± 0.052
3.677SerPro: 3.677 ± 0.056
3.278SerGln: 3.278 ± 0.041
3.353SerArg: 3.353 ± 0.04
9.999SerSer: 9.999 ± 0.186
5.854SerThr: 5.854 ± 0.069
4.484SerVal: 4.484 ± 0.041
0.848SerTrp: 0.848 ± 0.018
2.668SerTyr: 2.668 ± 0.038
0.0SerXaa: 0.0 ± 0.0
Thr
3.094ThrAla: 3.094 ± 0.037
0.535ThrCys: 0.535 ± 0.015
2.788ThrAsp: 2.788 ± 0.029
3.028ThrGlu: 3.028 ± 0.037
2.523ThrPhe: 2.523 ± 0.029
3.283ThrGly: 3.283 ± 0.044
1.124ThrHis: 1.124 ± 0.021
4.079ThrIle: 4.079 ± 0.04
4.116ThrLys: 4.116 ± 0.044
5.274ThrLeu: 5.274 ± 0.049
0.894ThrMet: 0.894 ± 0.017
3.235ThrAsn: 3.235 ± 0.032
3.121ThrPro: 3.121 ± 0.044
1.996ThrGln: 1.996 ± 0.034
2.22ThrArg: 2.22 ± 0.03
5.31ThrSer: 5.31 ± 0.072
3.967ThrThr: 3.967 ± 0.062
3.193ThrVal: 3.193 ± 0.037
0.583ThrTrp: 0.583 ± 0.014
1.708ThrTyr: 1.708 ± 0.026
0.0ThrXaa: 0.0 ± 0.0
Val
3.368ValAla: 3.368 ± 0.044
0.631ValCys: 0.631 ± 0.017
3.702ValAsp: 3.702 ± 0.04
4.226ValGlu: 4.226 ± 0.042
2.847ValPhe: 2.847 ± 0.036
3.22ValGly: 3.22 ± 0.041
1.127ValHis: 1.127 ± 0.019
3.788ValIle: 3.788 ± 0.035
4.198ValLys: 4.198 ± 0.048
5.843ValLeu: 5.843 ± 0.052
0.955ValMet: 0.955 ± 0.019
3.01ValAsn: 3.01 ± 0.036
2.667ValPro: 2.667 ± 0.039
2.119ValGln: 2.119 ± 0.029
2.112ValArg: 2.112 ± 0.028
4.819ValSer: 4.819 ± 0.045
3.05ValThr: 3.05 ± 0.033
3.92ValVal: 3.92 ± 0.045
0.615ValTrp: 0.615 ± 0.018
1.967ValTyr: 1.967 ± 0.025
0.0ValXaa: 0.0 ± 0.0
Trp
0.546TrpAla: 0.546 ± 0.014
0.18TrpCys: 0.18 ± 0.008
0.698TrpAsp: 0.698 ± 0.017
0.63TrpGlu: 0.63 ± 0.013
0.559TrpPhe: 0.559 ± 0.016
0.594TrpGly: 0.594 ± 0.018
0.189TrpHis: 0.189 ± 0.01
0.786TrpIle: 0.786 ± 0.018
0.824TrpLys: 0.824 ± 0.017
0.99TrpLeu: 0.99 ± 0.019
0.201TrpMet: 0.201 ± 0.009
0.657TrpAsn: 0.657 ± 0.017
0.3TrpPro: 0.3 ± 0.011
0.294TrpGln: 0.294 ± 0.01
0.546TrpArg: 0.546 ± 0.016
0.853TrpSer: 0.853 ± 0.019
0.554TrpThr: 0.554 ± 0.016
0.613TrpVal: 0.613 ± 0.016
0.17TrpTrp: 0.17 ± 0.008
0.404TrpTyr: 0.404 ± 0.014
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.769TyrAla: 1.769 ± 0.03
0.471TyrCys: 0.471 ± 0.014
2.232TyrAsp: 2.232 ± 0.037
2.247TyrGlu: 2.247 ± 0.027
1.71TyrPhe: 1.71 ± 0.027
2.049TyrGly: 2.049 ± 0.035
0.814TyrHis: 0.814 ± 0.018
2.24TyrIle: 2.24 ± 0.03
2.385TyrLys: 2.385 ± 0.031
3.532TyrLeu: 3.532 ± 0.043
0.558TyrMet: 0.558 ± 0.014
2.011TyrAsn: 2.011 ± 0.031
1.416TyrPro: 1.416 ± 0.025
1.498TyrGln: 1.498 ± 0.025
1.349TyrArg: 1.349 ± 0.021
2.786TyrSer: 2.786 ± 0.035
1.792TyrThr: 1.792 ± 0.027
1.922TyrVal: 1.922 ± 0.025
0.427TyrTrp: 0.427 ± 0.013
1.443TyrTyr: 1.443 ± 0.024
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 6406 proteins (2782713 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski