Salmonella phage SJ46

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Punavirus; Salmonella virus SJ46

Average proteome isoelectric point is 6.45

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 122 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1B0V861|A0A1B0V861_9CAUD Uncharacterized protein OS=Salmonella phage SJ46 OX=1815968 GN=J46_0083 PE=4 SV=1
MM1 pKa = 7.54AFIPPTIDD9 pKa = 4.44DD10 pKa = 3.84VRR12 pKa = 11.84HH13 pKa = 6.05CSNALSVDD21 pKa = 3.55PAEE24 pKa = 4.25TDD26 pKa = 3.0AARR29 pKa = 11.84AIAEE33 pKa = 4.36HH34 pKa = 6.3YY35 pKa = 10.88SKK37 pKa = 10.62ISNQEE42 pKa = 3.46YY43 pKa = 10.42RR44 pKa = 11.84ITQDD48 pKa = 4.89DD49 pKa = 4.74LDD51 pKa = 5.05DD52 pKa = 4.06LTDD55 pKa = 4.01TIEE58 pKa = 4.42YY59 pKa = 10.89LMATNQPDD67 pKa = 3.65SQQ69 pKa = 3.69

Molecular weight: 7.74 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1B0V7H9|A0A1B0V7H9_9CAUD Transposase OS=Salmonella phage SJ46 OX=1815968 GN=tnpA PE=4 SV=1
MM1 pKa = 7.42NKK3 pKa = 9.59LRR5 pKa = 11.84LLRR8 pKa = 11.84RR9 pKa = 11.84LSTMKK14 pKa = 10.64LSLAAIVFDD23 pKa = 4.49SIFMAVYY30 pKa = 9.91VLNEE34 pKa = 4.0TWPLEE39 pKa = 3.95PLLYY43 pKa = 10.67AGLRR47 pKa = 11.84LCLTFLSMAARR58 pKa = 11.84LMQQKK63 pKa = 7.9EE64 pKa = 4.23TASDD68 pKa = 3.91CPGRR72 pKa = 11.84AVRR75 pKa = 11.84KK76 pKa = 8.79YY77 pKa = 6.97MARR80 pKa = 11.84RR81 pKa = 11.84RR82 pKa = 11.84RR83 pKa = 3.46

Molecular weight: 9.67 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

122

0

122

30880

35

1493

253.1

28.16

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.621 ± 0.268

0.988 ± 0.105

6.062 ± 0.18

6.671 ± 0.199

3.507 ± 0.118

6.813 ± 0.229

1.745 ± 0.114

5.787 ± 0.14

5.755 ± 0.209

8.808 ± 0.234

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.542 ± 0.113

4.582 ± 0.177

3.996 ± 0.142

4.135 ± 0.126

5.991 ± 0.215

6.49 ± 0.162

5.738 ± 0.203

6.273 ± 0.139

1.367 ± 0.095

3.128 ± 0.144
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski