Naasia lichenicola

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Microbacteriaceae; Naasia

Average proteome isoelectric point is 5.98

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3498 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4S4FIG4|A0A4S4FIG4_9MICO Uncharacterized protein OS=Naasia lichenicola OX=2565933 GN=E6C64_13235 PE=4 SV=1
MM1 pKa = 7.77SGFEE5 pKa = 3.89KK6 pKa = 10.76AKK8 pKa = 10.34ASRR11 pKa = 11.84SRR13 pKa = 11.84TLKK16 pKa = 10.56NVLGGVAVIGVSVLFLSACSPTASTGSSEE45 pKa = 4.27TAAPPTDD52 pKa = 4.48DD53 pKa = 3.87LTLKK57 pKa = 10.43IGTALPQTGNLAYY70 pKa = 10.61LGPPEE75 pKa = 4.13EE76 pKa = 5.76AGVQYY81 pKa = 10.73AISEE85 pKa = 4.37INAATADD92 pKa = 3.39TGLTVDD98 pKa = 4.65LTLGDD103 pKa = 5.43SGDD106 pKa = 4.03TDD108 pKa = 3.11NKK110 pKa = 10.74AYY112 pKa = 8.31EE113 pKa = 4.24TEE115 pKa = 3.95IPRR118 pKa = 11.84LLGDD122 pKa = 3.91GVSAIIGAASSGTSLKK138 pKa = 10.9FIDD141 pKa = 4.45DD142 pKa = 3.73VVGAGVIQFSPANTSDD158 pKa = 3.9AFTTYY163 pKa = 10.71DD164 pKa = 4.0DD165 pKa = 3.44KK166 pKa = 11.81GLYY169 pKa = 9.82FRR171 pKa = 11.84TAPSDD176 pKa = 3.66VLQGEE181 pKa = 4.54VLGNLIAEE189 pKa = 5.36DD190 pKa = 4.32GNQTLGLIVLNDD202 pKa = 3.48SYY204 pKa = 11.65GTGLAKK210 pKa = 10.55YY211 pKa = 8.76VTDD214 pKa = 3.48SFEE217 pKa = 4.05AAGGEE222 pKa = 4.58VVAAPTYY229 pKa = 8.88NTGDD233 pKa = 3.41TSFDD237 pKa = 3.52SQIQEE242 pKa = 4.12VLAADD247 pKa = 4.23PDD249 pKa = 4.68AIALITFEE257 pKa = 4.29EE258 pKa = 5.0VKK260 pKa = 10.26TILPGLLASFPSDD273 pKa = 2.34KK274 pKa = 11.01LYY276 pKa = 10.88FVDD279 pKa = 5.61GNLKK283 pKa = 10.48NFGDD287 pKa = 4.21EE288 pKa = 4.34LPAGSLTGAKK298 pKa = 8.09GTLPGLSIDD307 pKa = 3.98SLTDD311 pKa = 3.22FTGALDD317 pKa = 4.53DD318 pKa = 4.25FASSEE323 pKa = 4.1GLPALKK329 pKa = 10.16DD330 pKa = 3.35YY331 pKa = 11.24SYY333 pKa = 11.43AAEE336 pKa = 4.55SYY338 pKa = 10.77DD339 pKa = 3.52ATVLLALGALAAGSTDD355 pKa = 3.19GTDD358 pKa = 2.92IAGKK362 pKa = 9.03LQEE365 pKa = 4.15VSGGSGDD372 pKa = 3.98GEE374 pKa = 4.44KK375 pKa = 9.99CTTYY379 pKa = 11.08ADD381 pKa = 3.61CAAIIVGGGTADD393 pKa = 3.39YY394 pKa = 10.88DD395 pKa = 4.59GISGPISFDD404 pKa = 4.37DD405 pKa = 4.26VGDD408 pKa = 4.1PQDD411 pKa = 3.49ASIGIYY417 pKa = 10.52VYY419 pKa = 11.18GEE421 pKa = 4.17DD422 pKa = 3.76NNYY425 pKa = 8.04TAYY428 pKa = 10.26EE429 pKa = 4.27GG430 pKa = 3.63

Molecular weight: 43.75 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4S4FP30|A0A4S4FP30_9MICO NAD-dependent epimerase/dehydratase family protein OS=Naasia lichenicola OX=2565933 GN=E6C64_04745 PE=3 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.42KK7 pKa = 8.47RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.22RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.87KK16 pKa = 9.7HH17 pKa = 5.84RR18 pKa = 11.84KK19 pKa = 8.56LLRR22 pKa = 11.84KK23 pKa = 7.78TRR25 pKa = 11.84HH26 pKa = 3.65QRR28 pKa = 11.84RR29 pKa = 11.84NKK31 pKa = 9.78KK32 pKa = 9.85

Molecular weight: 4.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3498

0

3498

1124881

27

2031

321.6

34.34

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.084 ± 0.052

0.451 ± 0.009

6.246 ± 0.038

5.461 ± 0.041

3.177 ± 0.025

8.996 ± 0.036

1.889 ± 0.023

4.973 ± 0.031

1.974 ± 0.027

10.205 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.746 ± 0.015

1.992 ± 0.023

5.376 ± 0.034

2.81 ± 0.021

7.108 ± 0.047

6.501 ± 0.035

6.024 ± 0.041

8.584 ± 0.036

1.412 ± 0.018

1.991 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski