Ludwigia yellow vein virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus

Average proteome isoelectric point is 7.93

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q4GZJ5|Q4GZJ5_9GEMI Protein V2 OS=Ludwigia yellow vein virus OX=325111 GN=av2 PE=3 SV=1
MM1 pKa = 7.95WDD3 pKa = 3.57PLEE6 pKa = 5.16HH7 pKa = 6.71EE8 pKa = 4.95FPEE11 pKa = 4.38TLHH14 pKa = 6.71GFRR17 pKa = 11.84CMLAIKK23 pKa = 9.78YY24 pKa = 7.92LQTVADD30 pKa = 4.84TYY32 pKa = 11.87APDD35 pKa = 3.48TVGYY39 pKa = 10.58DD40 pKa = 4.16LIRR43 pKa = 11.84DD44 pKa = 4.52LISIVRR50 pKa = 11.84AGNYY54 pKa = 9.38VEE56 pKa = 3.79ATRR59 pKa = 11.84RR60 pKa = 11.84YY61 pKa = 8.47SHH63 pKa = 7.11FNTRR67 pKa = 11.84LQSTSPVEE75 pKa = 3.85LRR77 pKa = 11.84FPRR80 pKa = 11.84NEE82 pKa = 3.96PCCCPHH88 pKa = 7.15CPRR91 pKa = 11.84HH92 pKa = 5.74NPKK95 pKa = 10.37EE96 pKa = 4.09CLDD99 pKa = 3.9VQAHH103 pKa = 5.56VSQAQTVQNVQKK115 pKa = 10.49PP116 pKa = 3.5

Molecular weight: 13.41 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q4GZJ1|Q4GZJ1_9GEMI Replication-associated protein OS=Ludwigia yellow vein virus OX=325111 GN=ac1 PE=3 SV=1
MM1 pKa = 7.04GHH3 pKa = 7.2CISMPSSNSKK13 pKa = 10.06VKK15 pKa = 10.36PNSGTPGILTLRR27 pKa = 11.84IPTPPHH33 pKa = 5.25NSIRR37 pKa = 11.84TSKK40 pKa = 10.35EE41 pKa = 3.31PSPVLMSSPISRR53 pKa = 11.84RR54 pKa = 11.84TVITSTGVFFKK65 pKa = 10.31STEE68 pKa = 3.97DD69 pKa = 3.44LLEE72 pKa = 4.31EE73 pKa = 4.11VSRR76 pKa = 11.84RR77 pKa = 11.84LMMQQQKK84 pKa = 9.68RR85 pKa = 3.58

Molecular weight: 9.42 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1038

85

311

173.0

19.83

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.684 ± 1.012

2.505 ± 0.467

4.913 ± 0.587

4.528 ± 0.541

4.528 ± 0.501

5.202 ± 0.408

3.854 ± 0.281

6.166 ± 0.847

5.78 ± 0.733

6.936 ± 0.492

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.119 ± 0.629

5.106 ± 0.44

6.647 ± 0.918

4.721 ± 0.677

7.225 ± 0.815

6.647 ± 1.31

6.166 ± 1.152

6.069 ± 0.601

1.445 ± 0.204

3.757 ± 0.66
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski