Torque teno midi virus 13

Taxonomy: Viruses; Anelloviridae; Gammatorquevirus

Average proteome isoelectric point is 7.19

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A7VM04|A7VM04_9VIRU Capsid protein OS=Torque teno midi virus 13 OX=2065054 PE=3 SV=1
MM1 pKa = 7.6SKK3 pKa = 10.54LCSTDD8 pKa = 3.79FYY10 pKa = 11.33KK11 pKa = 9.81KK12 pKa = 9.17TPFNPEE18 pKa = 3.5TQTQIWMSQLADD30 pKa = 3.31GHH32 pKa = 7.41DD33 pKa = 3.98NFCHH37 pKa = 6.3CNSPFAHH44 pKa = 7.0LLASIFPPGHH54 pKa = 7.17KK55 pKa = 10.55DD56 pKa = 3.08RR57 pKa = 11.84DD58 pKa = 3.61LTINQILKK66 pKa = 9.78RR67 pKa = 11.84DD68 pKa = 3.9YY69 pKa = 10.88IEE71 pKa = 3.91QCRR74 pKa = 11.84STGEE78 pKa = 3.85EE79 pKa = 4.56GEE81 pKa = 4.21NSGGEE86 pKa = 4.15KK87 pKa = 9.54PDD89 pKa = 3.15QGGGFKK95 pKa = 10.74GIEE98 pKa = 3.88EE99 pKa = 4.16KK100 pKa = 10.55QQEE103 pKa = 4.51EE104 pKa = 4.47EE105 pKa = 4.71EE106 pKa = 4.15EE107 pKa = 4.03DD108 pKa = 3.84LPEE111 pKa = 6.05KK112 pKa = 10.67EE113 pKa = 4.99LIDD116 pKa = 3.78MLAAAAEE123 pKa = 4.36DD124 pKa = 3.85DD125 pKa = 3.91TRR127 pKa = 5.45

Molecular weight: 14.35 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A7VM04|A7VM04_9VIRU Capsid protein OS=Torque teno midi virus 13 OX=2065054 PE=3 SV=1
MM1 pKa = 7.43PFYY4 pKa = 10.16WRR6 pKa = 11.84RR7 pKa = 11.84RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.19FWWGKK15 pKa = 9.63ARR17 pKa = 11.84PRR19 pKa = 11.84WRR21 pKa = 11.84FQRR24 pKa = 11.84YY25 pKa = 7.03RR26 pKa = 11.84RR27 pKa = 11.84KK28 pKa = 5.66TTRR31 pKa = 11.84RR32 pKa = 11.84RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84PARR39 pKa = 11.84KK40 pKa = 8.65RR41 pKa = 11.84AHH43 pKa = 6.84RR44 pKa = 11.84YY45 pKa = 7.37AGRR48 pKa = 11.84RR49 pKa = 11.84RR50 pKa = 11.84RR51 pKa = 11.84RR52 pKa = 11.84RR53 pKa = 11.84YY54 pKa = 8.31KK55 pKa = 10.32VRR57 pKa = 11.84RR58 pKa = 11.84KK59 pKa = 8.94RR60 pKa = 11.84QKK62 pKa = 9.76IPLFQWQPDD71 pKa = 3.98KK72 pKa = 10.98IVKK75 pKa = 10.19CKK77 pKa = 10.4IKK79 pKa = 10.73GVTTLVLGAEE89 pKa = 5.12GKK91 pKa = 9.98QLVCYY96 pKa = 10.01TNVKK100 pKa = 8.05TANTPAKK107 pKa = 10.07APGGGGFGCEE117 pKa = 3.92QFSLDD122 pKa = 4.98SLYY125 pKa = 11.21ADD127 pKa = 3.12YY128 pKa = 11.29KK129 pKa = 10.08LRR131 pKa = 11.84KK132 pKa = 9.29NVWTKK137 pKa = 11.52SNILLDD143 pKa = 3.66LCRR146 pKa = 11.84YY147 pKa = 9.39LFVKK151 pKa = 10.49ISFYY155 pKa = 10.84RR156 pKa = 11.84HH157 pKa = 6.65PEE159 pKa = 3.39TDD161 pKa = 5.92FIVTWHH167 pKa = 6.5RR168 pKa = 11.84QPPFDD173 pKa = 3.68ISKK176 pKa = 10.11EE177 pKa = 3.83IYY179 pKa = 9.63AACHH183 pKa = 5.22PQNMLLAKK191 pKa = 10.0HH192 pKa = 6.09KK193 pKa = 10.14MLILSKK199 pKa = 9.49FTNPKK204 pKa = 10.22GKK206 pKa = 9.96LKK208 pKa = 9.37KK209 pKa = 8.17TRR211 pKa = 11.84KK212 pKa = 9.27VKK214 pKa = 10.21PPKK217 pKa = 10.25QMLNKK222 pKa = 9.47WFFQEE227 pKa = 4.45HH228 pKa = 6.44FSHH231 pKa = 6.83EE232 pKa = 4.38PLLMIQATAANLNYY246 pKa = 10.23VNLGCCNTNQMCTFFYY262 pKa = 10.34INPGFYY268 pKa = 10.42QIANWGATTTTGYY281 pKa = 9.98IPYY284 pKa = 9.59SGYY287 pKa = 8.23PTATIYY293 pKa = 8.4TWNYY297 pKa = 9.04KK298 pKa = 7.54QWQTGQGGQPFTKK311 pKa = 9.66PQTYY315 pKa = 9.16NQSVNYY321 pKa = 7.97NTGFFSKK328 pKa = 10.59QMLEE332 pKa = 4.05AVQLTTDD339 pKa = 3.33QTGQRR344 pKa = 11.84PLGMNPVNICRR355 pKa = 11.84YY356 pKa = 10.26NPTLDD361 pKa = 3.51SGKK364 pKa = 10.95GNAIWLVSSHH374 pKa = 6.42ANTYY378 pKa = 10.34RR379 pKa = 11.84EE380 pKa = 4.48PITDD384 pKa = 3.12KK385 pKa = 10.93TLIFEE390 pKa = 4.51GLPLYY395 pKa = 9.72MLLYY399 pKa = 10.54GYY401 pKa = 10.6LSYY404 pKa = 10.62VQKK407 pKa = 10.78VKK409 pKa = 10.77NVRR412 pKa = 11.84DD413 pKa = 3.59FLNNYY418 pKa = 5.78TLCMRR423 pKa = 11.84SPALFPYY430 pKa = 8.92SQPGAEE436 pKa = 4.17TQVIIPVNEE445 pKa = 3.76NFIHH449 pKa = 6.92GKK451 pKa = 9.35AAYY454 pKa = 9.91DD455 pKa = 3.52EE456 pKa = 4.52TLTEE460 pKa = 4.29SVKK463 pKa = 10.94GYY465 pKa = 6.22WTPNVYY471 pKa = 9.66QQIQTLNTMVEE482 pKa = 4.06SSPYY486 pKa = 8.36VPKK489 pKa = 10.93YY490 pKa = 10.59SQTKK494 pKa = 8.75NSTWEE499 pKa = 3.46LDD501 pKa = 3.34MFYY504 pKa = 10.27TFHH507 pKa = 7.24FKK509 pKa = 10.02WGWTRR514 pKa = 11.84TNRR517 pKa = 11.84PPITDD522 pKa = 3.65PALQGTYY529 pKa = 9.19EE530 pKa = 4.34VPDD533 pKa = 3.85SLQQAVQIRR542 pKa = 11.84DD543 pKa = 3.44PGKK546 pKa = 10.23IKK548 pKa = 9.96ATSILHH554 pKa = 5.94PWDD557 pKa = 2.84IRR559 pKa = 11.84KK560 pKa = 10.05GYY562 pKa = 7.78FTTPALKK569 pKa = 10.5RR570 pKa = 11.84MSDD573 pKa = 3.38NLSIDD578 pKa = 3.4TTFQPDD584 pKa = 3.5SEE586 pKa = 4.75IIPTKK591 pKa = 10.04RR592 pKa = 11.84RR593 pKa = 11.84KK594 pKa = 8.24TGPEE598 pKa = 3.92LSTPWEE604 pKa = 4.14DD605 pKa = 3.18QKK607 pKa = 11.46EE608 pKa = 4.27IQTCLQEE615 pKa = 4.41LFKK618 pKa = 11.09KK619 pKa = 9.56STFQEE624 pKa = 4.12EE625 pKa = 4.67TEE627 pKa = 4.1EE628 pKa = 4.41DD629 pKa = 3.6LHH631 pKa = 9.07KK632 pKa = 10.84LIQQQHH638 pKa = 4.34QQQQEE643 pKa = 4.38LKK645 pKa = 8.37WNILRR650 pKa = 11.84VISEE654 pKa = 4.35IKK656 pKa = 10.23QSQNLLKK663 pKa = 10.72LQTGFPNN670 pKa = 3.45

Molecular weight: 78.83 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1330

127

670

332.5

38.34

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.887 ± 0.613

1.805 ± 0.163

4.586 ± 0.86

6.541 ± 1.495

4.586 ± 0.54

6.09 ± 0.543

2.481 ± 0.324

4.737 ± 0.345

8.722 ± 0.6

7.519 ± 0.232

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.955 ± 0.125

4.662 ± 0.564

6.767 ± 0.686

6.992 ± 0.522

5.94 ± 0.734

6.316 ± 2.027

7.444 ± 0.793

2.481 ± 0.923

1.729 ± 0.689

3.759 ± 0.947
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski