Capybara microvirus Cap3_SP_444

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.95

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W514|A0A4P8W514_9VIRU Minor capsid protein OS=Capybara microvirus Cap3_SP_444 OX=2585456 PE=4 SV=1
MM1 pKa = 7.68AKK3 pKa = 10.36FKK5 pKa = 9.75TAYY8 pKa = 10.74SNDD11 pKa = 3.32HH12 pKa = 5.58VVYY15 pKa = 10.45SQDD18 pKa = 3.15LSRR21 pKa = 11.84VEE23 pKa = 4.08EE24 pKa = 4.77PILAEE29 pKa = 4.1VVEE32 pKa = 4.59LEE34 pKa = 4.3FNEE37 pKa = 4.52GLDD40 pKa = 4.38DD41 pKa = 3.88SGNPIRR47 pKa = 11.84IAKK50 pKa = 8.01EE51 pKa = 3.34HH52 pKa = 6.17LVIKK56 pKa = 10.16EE57 pKa = 3.49IGKK60 pKa = 10.23RR61 pKa = 11.84NIQEE65 pKa = 4.45EE66 pKa = 4.54INASAIGCSVYY77 pKa = 10.65EE78 pKa = 3.79ILARR82 pKa = 11.84TNGEE86 pKa = 3.97VPTANGTFGNIADD99 pKa = 4.1SPKK102 pKa = 10.93DD103 pKa = 3.31LLEE106 pKa = 4.16AVEE109 pKa = 4.23LNKK112 pKa = 10.91NIDD115 pKa = 3.5QALDD119 pKa = 3.87DD120 pKa = 4.06YY121 pKa = 11.25KK122 pKa = 11.13GAYY125 pKa = 9.58SSIEE129 pKa = 3.79EE130 pKa = 4.32LLNDD134 pKa = 3.78VSNKK138 pKa = 9.72KK139 pKa = 9.64LQAYY143 pKa = 10.12LDD145 pKa = 3.85AKK147 pKa = 10.59LAEE150 pKa = 4.55LKK152 pKa = 10.87VKK154 pKa = 10.65EE155 pKa = 4.42GDD157 pKa = 3.5SHH159 pKa = 6.13EE160 pKa = 4.16

Molecular weight: 17.68 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4V1FVT5|A0A4V1FVT5_9VIRU Replication initiator protein OS=Capybara microvirus Cap3_SP_444 OX=2585456 PE=4 SV=1
MM1 pKa = 7.69CLYY4 pKa = 9.66PLNGFWTGTYY14 pKa = 9.47TDD16 pKa = 3.75NGKK19 pKa = 10.19KK20 pKa = 10.48DD21 pKa = 4.19FIVVDD26 pKa = 4.8GKK28 pKa = 9.4TKK30 pKa = 10.58LLSFTRR36 pKa = 11.84FQKK39 pKa = 10.58LYY41 pKa = 10.48KK42 pKa = 9.73KK43 pKa = 9.8AHH45 pKa = 6.61KK46 pKa = 9.88YY47 pKa = 10.13DD48 pKa = 3.36LRR50 pKa = 11.84QFHH53 pKa = 6.02QFDD56 pKa = 3.97GEE58 pKa = 4.53LYY60 pKa = 9.39LTDD63 pKa = 4.55PVAIPCGRR71 pKa = 11.84CIEE74 pKa = 4.35CRR76 pKa = 11.84LSYY79 pKa = 10.94SRR81 pKa = 11.84DD82 pKa = 2.89WALRR86 pKa = 11.84CVLEE90 pKa = 4.49SQDD93 pKa = 4.21HH94 pKa = 5.5EE95 pKa = 4.63FNYY98 pKa = 10.36FLTLTYY104 pKa = 10.98DD105 pKa = 3.48NSYY108 pKa = 11.2LPANGSLVKK117 pKa = 10.34KK118 pKa = 10.32DD119 pKa = 3.14VQLFIKK125 pKa = 10.48RR126 pKa = 11.84LRR128 pKa = 11.84KK129 pKa = 10.33YY130 pKa = 9.75IDD132 pKa = 3.32SHH134 pKa = 7.18VGSYY138 pKa = 9.8NIKK141 pKa = 9.79YY142 pKa = 8.04FLCGEE147 pKa = 4.32YY148 pKa = 10.6GEE150 pKa = 5.11HH151 pKa = 5.59SHH153 pKa = 6.82RR154 pKa = 11.84PHH156 pKa = 5.82YY157 pKa = 10.43HH158 pKa = 6.86LLLFNCPLPCLVPLHH173 pKa = 7.2DD174 pKa = 4.38NLFVSEE180 pKa = 4.8PLFKK184 pKa = 10.56LWPFGSHH191 pKa = 6.71VIGDD195 pKa = 3.72VTFEE199 pKa = 3.94SAAYY203 pKa = 7.85VARR206 pKa = 11.84YY207 pKa = 9.08VMKK210 pKa = 10.22KK211 pKa = 9.81CNSSSLVFDD220 pKa = 4.1SSVEE224 pKa = 3.93PEE226 pKa = 4.12FVLMSRR232 pKa = 11.84RR233 pKa = 11.84PGIGKK238 pKa = 9.81NYY240 pKa = 9.74FDD242 pKa = 3.41SHH244 pKa = 6.67YY245 pKa = 11.43DD246 pKa = 3.29RR247 pKa = 11.84IYY249 pKa = 11.1KK250 pKa = 10.07LDD252 pKa = 3.99SIYY255 pKa = 10.54LARR258 pKa = 11.84YY259 pKa = 7.61GIPLRR264 pKa = 11.84FKK266 pKa = 9.81PPRR269 pKa = 11.84YY270 pKa = 9.2FDD272 pKa = 3.58RR273 pKa = 11.84LYY275 pKa = 11.23EE276 pKa = 4.8KK277 pKa = 10.13IDD279 pKa = 3.45SDD281 pKa = 3.89FLSSVKK287 pKa = 10.57AEE289 pKa = 3.66RR290 pKa = 11.84LAFSKK295 pKa = 10.76SSSRR299 pKa = 11.84ASFLHH304 pKa = 7.03IGEE307 pKa = 5.19TIDD310 pKa = 4.38SYY312 pKa = 11.79DD313 pKa = 3.14ISLVNHH319 pKa = 5.84HH320 pKa = 6.41VEE322 pKa = 3.86YY323 pKa = 10.95LKK325 pKa = 8.84THH327 pKa = 5.83RR328 pKa = 11.84LKK330 pKa = 11.31LLVRR334 pKa = 11.84TLL336 pKa = 3.39

Molecular weight: 39.42 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1378

87

541

229.7

25.99

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.096 ± 1.719

1.451 ± 0.555

6.313 ± 0.288

5.152 ± 1.129

5.37 ± 0.84

4.935 ± 0.584

2.104 ± 0.753

6.967 ± 1.631

6.241 ± 0.971

9.289 ± 1.424

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.104 ± 0.592

5.878 ± 0.859

4.282 ± 0.86

2.903 ± 0.631

4.427 ± 0.715

9.289 ± 0.633

6.023 ± 1.181

5.443 ± 0.398

0.726 ± 0.295

5.007 ± 0.907
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski