Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_444

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
5.084AlaAla: 5.084 ± 4.532
0.726AlaCys: 0.726 ± 0.901
4.357AlaAsp: 4.357 ± 2.59
2.905AlaGlu: 2.905 ± 1.855
2.905AlaPhe: 2.905 ± 0.927
2.905AlaGly: 2.905 ± 1.439
1.452AlaHis: 1.452 ± 0.537
5.084AlaIle: 5.084 ± 0.901
3.631AlaLys: 3.631 ± 2.494
5.81AlaLeu: 5.81 ± 1.38
1.452AlaMet: 1.452 ± 0.81
2.905AlaAsn: 2.905 ± 1.302
1.452AlaPro: 1.452 ± 0.947
1.452AlaGln: 1.452 ± 1.872
2.179AlaArg: 2.179 ± 1.414
4.357AlaSer: 4.357 ± 1.553
2.179AlaThr: 2.179 ± 1.118
2.179AlaVal: 2.179 ± 1.037
0.726AlaTrp: 0.726 ± 0.474
7.262AlaTyr: 7.262 ± 2.894
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
1.452CysGly: 1.452 ± 1.216
0.0CysHis: 0.0 ± 0.0
1.452CysIle: 1.452 ± 0.933
0.0CysLys: 0.0 ± 0.0
2.905CysLeu: 2.905 ± 1.083
0.0CysMet: 0.0 ± 0.0
0.726CysAsn: 0.726 ± 0.608
0.726CysPro: 0.726 ± 0.608
0.0CysGln: 0.0 ± 0.0
1.452CysArg: 1.452 ± 0.537
2.179CysSer: 2.179 ± 2.518
1.452CysThr: 1.452 ± 1.803
2.179CysVal: 2.179 ± 0.81
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
3.631AspAla: 3.631 ± 1.241
0.0AspCys: 0.0 ± 0.0
3.631AspAsp: 3.631 ± 2.024
2.179AspGlu: 2.179 ± 1.118
2.905AspPhe: 2.905 ± 1.303
2.179AspGly: 2.179 ± 1.045
2.905AspHis: 2.905 ± 1.302
4.357AspIle: 4.357 ± 1.36
2.179AspLys: 2.179 ± 1.196
5.81AspLeu: 5.81 ± 1.54
0.726AspMet: 0.726 ± 0.936
5.81AspAsn: 5.81 ± 1.348
0.726AspPro: 0.726 ± 0.608
3.631AspGln: 3.631 ± 1.241
3.631AspArg: 3.631 ± 1.885
11.619AspSer: 11.619 ± 2.533
1.452AspThr: 1.452 ± 0.947
2.905AspVal: 2.905 ± 1.113
0.726AspTrp: 0.726 ± 0.608
2.179AspTyr: 2.179 ± 0.96
0.0AspXaa: 0.0 ± 0.0
Glu
2.179GluAla: 2.179 ± 0.96
0.726GluCys: 0.726 ± 0.608
0.0GluAsp: 0.0 ± 0.0
3.631GluGlu: 3.631 ± 2.522
5.084GluPhe: 5.084 ± 1.25
1.452GluGly: 1.452 ± 1.76
2.179GluHis: 2.179 ± 0.749
2.179GluIle: 2.179 ± 2.64
3.631GluLys: 3.631 ± 1.918
5.81GluLeu: 5.81 ± 3.221
2.905GluMet: 2.905 ± 1.843
1.452GluAsn: 1.452 ± 0.947
3.631GluPro: 3.631 ± 0.962
0.726GluGln: 0.726 ± 0.936
2.905GluArg: 2.905 ± 1.732
3.631GluSer: 3.631 ± 3.381
1.452GluThr: 1.452 ± 0.537
2.905GluVal: 2.905 ± 1.579
0.726GluTrp: 0.726 ± 0.474
4.357GluTyr: 4.357 ± 1.236
0.0GluXaa: 0.0 ± 0.0
Phe
2.905PheAla: 2.905 ± 1.439
0.0PheCys: 0.0 ± 0.0
5.81PheAsp: 5.81 ± 1.966
2.905PheGlu: 2.905 ± 1.031
2.179PhePhe: 2.179 ± 1.222
3.631PheGly: 3.631 ± 0.997
0.726PheHis: 0.726 ± 0.608
4.357PheIle: 4.357 ± 1.932
2.179PheLys: 2.179 ± 1.414
5.084PheLeu: 5.084 ± 2.067
0.726PheMet: 0.726 ± 0.474
4.357PheAsn: 4.357 ± 0.872
0.726PhePro: 0.726 ± 0.474
1.452PheGln: 1.452 ± 0.537
2.179PheArg: 2.179 ± 1.421
4.357PheSer: 4.357 ± 2.11
5.81PheThr: 5.81 ± 1.37
3.631PheVal: 3.631 ± 1.38
0.726PheTrp: 0.726 ± 0.608
0.0PheTyr: 0.0 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
2.905GlyAla: 2.905 ± 1.048
0.726GlyCys: 0.726 ± 0.88
2.905GlyAsp: 2.905 ± 0.744
5.084GlyGlu: 5.084 ± 2.032
1.452GlyPhe: 1.452 ± 0.537
1.452GlyGly: 1.452 ± 0.947
0.726GlyHis: 0.726 ± 0.936
1.452GlyIle: 1.452 ± 1.216
5.084GlyLys: 5.084 ± 1.366
3.631GlyLeu: 3.631 ± 1.253
1.452GlyMet: 1.452 ± 1.281
4.357GlyAsn: 4.357 ± 2.074
0.726GlyPro: 0.726 ± 0.474
1.452GlyGln: 1.452 ± 0.947
1.452GlyArg: 1.452 ± 1.06
5.81GlySer: 5.81 ± 2.087
4.357GlyThr: 4.357 ± 1.553
3.631GlyVal: 3.631 ± 2.193
0.0GlyTrp: 0.0 ± 0.0
0.726GlyTyr: 0.726 ± 0.474
0.0GlyXaa: 0.0 ± 0.0
His
0.726HisAla: 0.726 ± 0.936
0.0HisCys: 0.0 ± 0.0
2.179HisAsp: 2.179 ± 0.876
1.452HisGlu: 1.452 ± 1.009
1.452HisPhe: 1.452 ± 1.043
0.0HisGly: 0.0 ± 0.0
1.452HisHis: 1.452 ± 0.537
0.726HisIle: 0.726 ± 0.608
0.726HisLys: 0.726 ± 0.608
1.452HisLeu: 1.452 ± 1.009
0.726HisMet: 0.726 ± 0.456
0.726HisAsn: 0.726 ± 0.474
0.0HisPro: 0.0 ± 0.0
0.726HisGln: 0.726 ± 0.608
1.452HisArg: 1.452 ± 1.216
1.452HisSer: 1.452 ± 0.537
0.726HisThr: 0.726 ± 0.474
2.905HisVal: 2.905 ± 1.929
0.0HisTrp: 0.0 ± 0.0
2.179HisTyr: 2.179 ± 1.045
0.0HisXaa: 0.0 ± 0.0
Ile
5.084IleAla: 5.084 ± 2.497
2.179IleCys: 2.179 ± 2.081
7.988IleAsp: 7.988 ± 2.363
3.631IleGlu: 3.631 ± 1.44
1.452IlePhe: 1.452 ± 0.964
6.536IleGly: 6.536 ± 1.843
0.0IleHis: 0.0 ± 0.0
5.084IleIle: 5.084 ± 2.989
6.536IleLys: 6.536 ± 3.329
5.81IleLeu: 5.81 ± 2.153
0.726IleMet: 0.726 ± 0.474
4.357IleAsn: 4.357 ± 1.998
3.631IlePro: 3.631 ± 1.291
2.179IleGln: 2.179 ± 1.091
1.452IleArg: 1.452 ± 1.538
5.084IleSer: 5.084 ± 2.1
2.905IleThr: 2.905 ± 1.343
1.452IleVal: 1.452 ± 0.933
1.452IleTrp: 1.452 ± 0.947
2.179IleTyr: 2.179 ± 1.045
0.0IleXaa: 0.0 ± 0.0
Lys
4.357LysAla: 4.357 ± 2.723
0.726LysCys: 0.726 ± 0.608
2.905LysAsp: 2.905 ± 1.432
4.357LysGlu: 4.357 ± 2.711
2.905LysPhe: 2.905 ± 1.839
0.726LysGly: 0.726 ± 0.88
0.726LysHis: 0.726 ± 0.474
2.905LysIle: 2.905 ± 2.598
4.357LysLys: 4.357 ± 2.193
10.893LysLeu: 10.893 ± 1.936
0.726LysMet: 0.726 ± 0.871
5.084LysAsn: 5.084 ± 1.642
1.452LysPro: 1.452 ± 0.537
0.726LysGln: 0.726 ± 0.936
5.084LysArg: 5.084 ± 1.178
4.357LysSer: 4.357 ± 1.36
4.357LysThr: 4.357 ± 1.266
2.179LysVal: 2.179 ± 1.374
0.0LysTrp: 0.0 ± 0.0
3.631LysTyr: 3.631 ± 1.765
0.0LysXaa: 0.0 ± 0.0
Leu
7.988LeuAla: 7.988 ± 3.07
2.179LeuCys: 2.179 ± 1.731
5.084LeuAsp: 5.084 ± 2.206
3.631LeuGlu: 3.631 ± 1.6
5.81LeuPhe: 5.81 ± 2.15
2.905LeuGly: 2.905 ± 1.895
2.179LeuHis: 2.179 ± 1.045
8.715LeuIle: 8.715 ± 5.648
5.81LeuLys: 5.81 ± 1.773
6.536LeuLeu: 6.536 ± 2.498
1.452LeuMet: 1.452 ± 0.957
5.81LeuAsn: 5.81 ± 1.256
5.81LeuPro: 5.81 ± 1.919
0.726LeuGln: 0.726 ± 0.88
5.084LeuArg: 5.084 ± 2.096
5.81LeuSer: 5.81 ± 1.445
4.357LeuThr: 4.357 ± 1.433
6.536LeuVal: 6.536 ± 3.869
1.452LeuTrp: 1.452 ± 0.537
4.357LeuTyr: 4.357 ± 2.091
0.0LeuXaa: 0.0 ± 0.0
Met
1.452MetAla: 1.452 ± 1.225
1.452MetCys: 1.452 ± 0.537
0.726MetAsp: 0.726 ± 0.474
0.0MetGlu: 0.0 ± 0.0
0.726MetPhe: 0.726 ± 0.936
0.726MetGly: 0.726 ± 0.474
0.0MetHis: 0.0 ± 0.0
1.452MetIle: 1.452 ± 1.043
2.179MetLys: 2.179 ± 0.876
0.726MetLeu: 0.726 ± 0.474
0.0MetMet: 0.0 ± 0.0
1.452MetAsn: 1.452 ± 0.909
2.179MetPro: 2.179 ± 1.421
0.726MetGln: 0.726 ± 0.901
0.726MetArg: 0.726 ± 0.474
1.452MetSer: 1.452 ± 1.06
2.179MetThr: 2.179 ± 1.231
0.726MetVal: 0.726 ± 0.474
0.0MetTrp: 0.0 ± 0.0
2.179MetTyr: 2.179 ± 1.107
0.0MetXaa: 0.0 ± 0.0
Asn
3.631AsnAla: 3.631 ± 1.253
0.726AsnCys: 0.726 ± 0.608
3.631AsnAsp: 3.631 ± 1.693
2.905AsnGlu: 2.905 ± 1.174
2.179AsnPhe: 2.179 ± 1.805
6.536AsnGly: 6.536 ± 2.498
0.726AsnHis: 0.726 ± 0.608
5.81AsnIle: 5.81 ± 2.708
4.357AsnLys: 4.357 ± 1.92
5.81AsnLeu: 5.81 ± 2.448
1.452AsnMet: 1.452 ± 0.947
2.179AsnAsn: 2.179 ± 1.231
2.905AsnPro: 2.905 ± 1.378
2.179AsnGln: 2.179 ± 1.421
1.452AsnArg: 1.452 ± 1.459
4.357AsnSer: 4.357 ± 1.237
4.357AsnThr: 4.357 ± 2.213
0.726AsnVal: 0.726 ± 0.474
0.0AsnTrp: 0.0 ± 0.0
2.905AsnTyr: 2.905 ± 1.203
0.0AsnXaa: 0.0 ± 0.0
Pro
2.905ProAla: 2.905 ± 1.214
1.452ProCys: 1.452 ± 1.216
1.452ProAsp: 1.452 ± 0.947
2.179ProGlu: 2.179 ± 1.011
1.452ProPhe: 1.452 ± 0.537
5.084ProGly: 5.084 ± 1.949
0.726ProHis: 0.726 ± 0.608
6.536ProIle: 6.536 ± 2.366
1.452ProLys: 1.452 ± 1.538
3.631ProLeu: 3.631 ± 3.04
1.452ProMet: 1.452 ± 0.947
0.0ProAsn: 0.0 ± 0.0
0.726ProPro: 0.726 ± 0.608
1.452ProGln: 1.452 ± 0.947
0.726ProArg: 0.726 ± 0.608
2.179ProSer: 2.179 ± 1.784
2.179ProThr: 2.179 ± 0.96
5.084ProVal: 5.084 ± 2.1
0.726ProTrp: 0.726 ± 0.474
1.452ProTyr: 1.452 ± 0.947
0.0ProXaa: 0.0 ± 0.0
Gln
2.905GlnAla: 2.905 ± 1.695
0.0GlnCys: 0.0 ± 0.0
2.179GlnAsp: 2.179 ± 0.749
1.452GlnGlu: 1.452 ± 0.79
3.631GlnPhe: 3.631 ± 1.111
0.726GlnGly: 0.726 ± 0.474
0.726GlnHis: 0.726 ± 0.936
2.179GlnIle: 2.179 ± 1.222
1.452GlnLys: 1.452 ± 0.537
1.452GlnLeu: 1.452 ± 1.06
0.726GlnMet: 0.726 ± 0.936
2.179GlnAsn: 2.179 ± 1.107
0.726GlnPro: 0.726 ± 0.474
0.726GlnGln: 0.726 ± 0.474
1.452GlnArg: 1.452 ± 0.909
0.726GlnSer: 0.726 ± 0.901
2.179GlnThr: 2.179 ± 1.421
2.179GlnVal: 2.179 ± 1.222
0.0GlnTrp: 0.0 ± 0.0
1.452GlnTyr: 1.452 ± 0.909
0.0GlnXaa: 0.0 ± 0.0
Arg
2.179ArgAla: 2.179 ± 1.011
1.452ArgCys: 1.452 ± 1.216
2.905ArgAsp: 2.905 ± 1.031
3.631ArgGlu: 3.631 ± 1.969
2.905ArgPhe: 2.905 ± 1.303
0.0ArgGly: 0.0 ± 0.0
0.0ArgHis: 0.0 ± 0.0
2.905ArgIle: 2.905 ± 0.744
2.179ArgLys: 2.179 ± 0.825
4.357ArgLeu: 4.357 ± 2.818
2.179ArgMet: 2.179 ± 1.107
0.726ArgAsn: 0.726 ± 0.88
5.084ArgPro: 5.084 ± 1.469
1.452ArgGln: 1.452 ± 1.06
1.452ArgArg: 1.452 ± 0.537
3.631ArgSer: 3.631 ± 1.356
2.905ArgThr: 2.905 ± 0.744
1.452ArgVal: 1.452 ± 1.225
0.0ArgTrp: 0.0 ± 0.0
2.905ArgTyr: 2.905 ± 1.624
0.0ArgXaa: 0.0 ± 0.0
Ser
5.81SerAla: 5.81 ± 1.626
0.726SerCys: 0.726 ± 0.474
5.81SerAsp: 5.81 ± 1.634
2.905SerGlu: 2.905 ± 1.069
5.81SerPhe: 5.81 ± 2.427
5.084SerGly: 5.084 ± 1.526
3.631SerHis: 3.631 ± 2.486
4.357SerIle: 4.357 ± 2.745
3.631SerLys: 3.631 ± 1.284
7.262SerLeu: 7.262 ± 2.418
0.0SerMet: 0.0 ± 0.0
5.084SerAsn: 5.084 ± 2.051
5.084SerPro: 5.084 ± 1.964
2.905SerGln: 2.905 ± 0.744
3.631SerArg: 3.631 ± 1.629
13.072SerSer: 13.072 ± 2.358
6.536SerThr: 6.536 ± 3.264
5.81SerVal: 5.81 ± 1.928
0.726SerTrp: 0.726 ± 0.474
5.084SerTyr: 5.084 ± 1.929
0.0SerXaa: 0.0 ± 0.0
Thr
3.631ThrAla: 3.631 ± 2.024
0.0ThrCys: 0.0 ± 0.0
4.357ThrAsp: 4.357 ± 1.237
2.179ThrGlu: 2.179 ± 1.196
2.905ThrPhe: 2.905 ± 0.744
2.905ThrGly: 2.905 ± 0.97
1.452ThrHis: 1.452 ± 0.537
3.631ThrIle: 3.631 ± 1.934
3.631ThrLys: 3.631 ± 1.062
6.536ThrLeu: 6.536 ± 1.806
0.726ThrMet: 0.726 ± 0.474
2.179ThrAsn: 2.179 ± 1.091
2.905ThrPro: 2.905 ± 1.78
2.179ThrGln: 2.179 ± 1.421
2.905ThrArg: 2.905 ± 1.214
7.988ThrSer: 7.988 ± 4.162
3.631ThrThr: 3.631 ± 1.862
2.905ThrVal: 2.905 ± 1.895
0.0ThrTrp: 0.0 ± 0.0
3.631ThrTyr: 3.631 ± 1.291
0.0ThrXaa: 0.0 ± 0.0
Val
1.452ValAla: 1.452 ± 1.216
0.726ValCys: 0.726 ± 0.474
2.179ValAsp: 2.179 ± 1.011
3.631ValGlu: 3.631 ± 2.773
1.452ValPhe: 1.452 ± 0.537
2.905ValGly: 2.905 ± 1.732
0.0ValHis: 0.0 ± 0.0
3.631ValIle: 3.631 ± 1.166
5.084ValLys: 5.084 ± 1.82
5.084ValLeu: 5.084 ± 1.074
2.905ValMet: 2.905 ± 0.97
6.536ValAsn: 6.536 ± 2.091
2.179ValPro: 2.179 ± 0.749
2.179ValGln: 2.179 ± 0.81
2.905ValArg: 2.905 ± 1.031
2.905ValSer: 2.905 ± 0.903
3.631ValThr: 3.631 ± 1.962
2.905ValVal: 2.905 ± 1.543
0.0ValTrp: 0.0 ± 0.0
2.179ValTyr: 2.179 ± 1.604
0.0ValXaa: 0.0 ± 0.0
Trp
0.726TrpAla: 0.726 ± 0.608
0.0TrpCys: 0.0 ± 0.0
0.726TrpAsp: 0.726 ± 0.474
0.0TrpGlu: 0.0 ± 0.0
0.726TrpPhe: 0.726 ± 0.474
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
0.0TrpLys: 0.0 ± 0.0
0.0TrpLeu: 0.0 ± 0.0
0.0TrpMet: 0.0 ± 0.0
1.452TrpAsn: 1.452 ± 0.947
0.726TrpPro: 0.726 ± 0.608
0.0TrpGln: 0.0 ± 0.0
0.0TrpArg: 0.0 ± 0.0
0.726TrpSer: 0.726 ± 0.474
1.452TrpThr: 1.452 ± 0.537
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.726TrpTyr: 0.726 ± 0.474
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.452TyrAla: 1.452 ± 0.909
0.726TyrCys: 0.726 ± 0.901
4.357TyrAsp: 4.357 ± 2.242
2.905TyrGlu: 2.905 ± 0.744
5.81TyrPhe: 5.81 ± 1.991
2.179TyrGly: 2.179 ± 1.045
1.452TyrHis: 1.452 ± 0.537
2.905TyrIle: 2.905 ± 1.214
4.357TyrLys: 4.357 ± 0.872
4.357TyrLeu: 4.357 ± 2.193
0.0TyrMet: 0.0 ± 0.0
1.452TyrAsn: 1.452 ± 1.06
1.452TyrPro: 1.452 ± 0.537
2.179TyrGln: 2.179 ± 1.784
2.179TyrArg: 2.179 ± 1.421
7.262TyrSer: 7.262 ± 2.083
2.179TyrThr: 2.179 ± 0.81
2.179TyrVal: 2.179 ± 1.554
0.0TyrTrp: 0.0 ± 0.0
0.726TyrTyr: 0.726 ± 0.474
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 6 proteins (1378 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski