Chryseobacterium lacus

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Weeksellaceae; Chryseobacterium group; Chryseobacterium

Average proteome isoelectric point is 6.56

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2165 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A368MX06|A0A368MX06_9FLAO Type II toxin-antitoxin system RelE/ParE family toxin OS=Chryseobacterium lacus OX=2058346 GN=DQ356_08510 PE=4 SV=1
MM1 pKa = 6.55KK2 pKa = 9.78TIYY5 pKa = 10.06IDD7 pKa = 3.45FTDD10 pKa = 3.67IGDD13 pKa = 3.74VEE15 pKa = 5.01DD16 pKa = 6.03FYY18 pKa = 11.88LQLKK22 pKa = 9.78EE23 pKa = 4.82KK24 pKa = 10.17IQLPEE29 pKa = 3.84HH30 pKa = 6.61FGNNLDD36 pKa = 3.75ALYY39 pKa = 10.75DD40 pKa = 3.95VISGHH45 pKa = 7.16LEE47 pKa = 3.98LPLHH51 pKa = 6.33LEE53 pKa = 4.31FVNMRR58 pKa = 11.84VDD60 pKa = 3.3QLEE63 pKa = 4.12DD64 pKa = 3.73FEE66 pKa = 5.05EE67 pKa = 4.16VLITLEE73 pKa = 3.91EE74 pKa = 5.11AEE76 pKa = 4.82DD77 pKa = 3.89EE78 pKa = 4.55VEE80 pKa = 4.8GFSFSYY86 pKa = 10.82YY87 pKa = 10.35LEE89 pKa = 4.23QYY91 pKa = 10.76EE92 pKa = 4.52DD93 pKa = 3.34

Molecular weight: 11.06 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A368MV71|A0A368MV71_9FLAO Integrase (Fragment) OS=Chryseobacterium lacus OX=2058346 GN=DQ356_11150 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPSEE10 pKa = 3.59RR11 pKa = 11.84KK12 pKa = 9.33RR13 pKa = 11.84RR14 pKa = 11.84NKK16 pKa = 10.03HH17 pKa = 3.97GFRR20 pKa = 11.84EE21 pKa = 4.33RR22 pKa = 11.84MSTPNGRR29 pKa = 11.84RR30 pKa = 11.84VLAARR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 9.98GRR40 pKa = 11.84KK41 pKa = 8.71SLTVSAMRR49 pKa = 11.84AKK51 pKa = 10.48RR52 pKa = 3.38

Molecular weight: 6.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2165

0

2165

706491

24

2328

326.3

36.88

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.59 ± 0.048

0.733 ± 0.016

5.128 ± 0.032

6.936 ± 0.074

5.375 ± 0.044

6.473 ± 0.057

1.918 ± 0.026

7.669 ± 0.046

7.502 ± 0.065

9.062 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.573 ± 0.026

5.801 ± 0.059

3.681 ± 0.033

3.765 ± 0.034

3.778 ± 0.039

6.292 ± 0.041

5.662 ± 0.07

6.093 ± 0.044

1.013 ± 0.017

3.956 ± 0.039
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski