Glaciihabitans arcticus

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Microbacteriaceae; Glaciihabitans

Average proteome isoelectric point is 5.89

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2984 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Q9GXY9|A0A4Q9GXY9_9MICO ABC transporter substrate-binding protein OS=Glaciihabitans arcticus OX=2668039 GN=EYE40_12340 PE=3 SV=1
MM1 pKa = 7.81AEE3 pKa = 4.39GDD5 pKa = 4.35NPFPWGLTPGGKK17 pKa = 9.27PEE19 pKa = 5.1DD20 pKa = 4.46EE21 pKa = 4.55EE22 pKa = 4.76TPPTPPVAPEE32 pKa = 5.18PIDD35 pKa = 3.18QGYY38 pKa = 8.09FAAVTIEE45 pKa = 4.58EE46 pKa = 4.51PTSPAPEE53 pKa = 4.31GLPTEE58 pKa = 4.88AMASQEE64 pKa = 3.75WDD66 pKa = 3.68GPATEE71 pKa = 5.35AMPAQEE77 pKa = 4.26WEE79 pKa = 4.7GPPTDD84 pKa = 4.45PFPYY88 pKa = 9.5HH89 pKa = 6.59QPAPWEE95 pKa = 4.15PPPVDD100 pKa = 3.49EE101 pKa = 5.38SLGGTSNALAAQPIGLDD118 pKa = 3.39APVGEE123 pKa = 4.76SVPGEE128 pKa = 3.95NTDD131 pKa = 4.51AIEE134 pKa = 4.33DD135 pKa = 3.92LFGEE139 pKa = 5.04GSFQEE144 pKa = 4.36YY145 pKa = 9.77EE146 pKa = 3.91DD147 pKa = 5.22AIVVLEE153 pKa = 4.73GIPFPGKK160 pKa = 10.2AVEE163 pKa = 4.06PAAAPGALVAPPPTLLPAEE182 pKa = 4.27PMPRR186 pKa = 11.84LQRR189 pKa = 11.84NLLWAAGGLVAALALVAVFLGGVRR213 pKa = 11.84LAPQFAAAPEE223 pKa = 4.37APAVPSSAPTLAPEE237 pKa = 4.43SLGPLPAGVHH247 pKa = 5.46AWSDD251 pKa = 3.68LLGTEE256 pKa = 4.2CVEE259 pKa = 4.73PYY261 pKa = 10.39VSPWDD266 pKa = 3.61KK267 pKa = 10.93EE268 pKa = 4.23FTVVDD273 pKa = 3.63CSGPHH278 pKa = 5.36TAQLVATGVFEE289 pKa = 6.2DD290 pKa = 5.07SILDD294 pKa = 4.0AYY296 pKa = 9.86PGLEE300 pKa = 3.94EE301 pKa = 4.08LQSRR305 pKa = 11.84MGQLCSNATNVDD317 pKa = 3.28YY318 pKa = 9.2TAAKK322 pKa = 9.72AYY324 pKa = 11.0SDD326 pKa = 3.57IQVSASYY333 pKa = 10.62AADD336 pKa = 3.57EE337 pKa = 4.26QSWIDD342 pKa = 3.09GDD344 pKa = 4.0RR345 pKa = 11.84NYY347 pKa = 10.82FCFVSRR353 pKa = 11.84STGEE357 pKa = 3.98PLTSSVAMPDD367 pKa = 2.93RR368 pKa = 11.84PTPVVPVVPEE378 pKa = 4.0PEE380 pKa = 3.86PP381 pKa = 3.96

Molecular weight: 39.82 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Q9GUL4|A0A4Q9GUL4_9MICO ADP-dependent (S)-NAD(P)H-hydrate dehydratase OS=Glaciihabitans arcticus OX=2668039 GN=nnrD PE=3 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.42KK7 pKa = 8.47RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.22RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.87KK16 pKa = 9.7HH17 pKa = 5.84RR18 pKa = 11.84KK19 pKa = 8.56LLRR22 pKa = 11.84KK23 pKa = 7.78TRR25 pKa = 11.84HH26 pKa = 3.65QRR28 pKa = 11.84RR29 pKa = 11.84NKK31 pKa = 9.78KK32 pKa = 9.85

Molecular weight: 4.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2984

0

2984

981908

24

6078

329.1

35.16

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.682 ± 0.054

0.447 ± 0.011

5.941 ± 0.041

5.608 ± 0.057

3.377 ± 0.03

8.856 ± 0.053

1.748 ± 0.024

4.98 ± 0.036

2.422 ± 0.037

10.316 ± 0.07

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.652 ± 0.02

2.393 ± 0.037

5.191 ± 0.035

2.71 ± 0.023

6.311 ± 0.062

6.315 ± 0.041

6.578 ± 0.089

8.909 ± 0.041

1.465 ± 0.018

2.097 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski