Rattus norvegicus papillomavirus 3

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Iotapapillomavirus; Iotapapillomavirus 1

Average proteome isoelectric point is 6.85

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0S2LV84|A0A0S2LV84_MNPV Replication protein E1 OS=Rattus norvegicus papillomavirus 3 OX=1756445 GN=E1 PE=3 SV=1
MM1 pKa = 7.71IGPEE5 pKa = 4.18TNRR8 pKa = 11.84TLPNDD13 pKa = 3.92PDD15 pKa = 4.3LVSLYY20 pKa = 10.26CDD22 pKa = 3.03EE23 pKa = 4.38VLEE26 pKa = 4.73DD27 pKa = 4.05EE28 pKa = 5.29PIEE31 pKa = 4.52AEE33 pKa = 4.1QSQEE37 pKa = 3.98EE38 pKa = 4.03PSIIYY43 pKa = 9.82RR44 pKa = 11.84VLIEE48 pKa = 4.66CPKK51 pKa = 9.58CDD53 pKa = 3.85RR54 pKa = 11.84IIRR57 pKa = 11.84LLCSADD63 pKa = 3.29TASIRR68 pKa = 11.84GLEE71 pKa = 3.87LLLLGGLQIICPRR84 pKa = 11.84CAEE87 pKa = 4.0KK88 pKa = 10.43HH89 pKa = 5.1GRR91 pKa = 11.84PP92 pKa = 3.78

Molecular weight: 10.29 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0S2LV87|A0A0S2LV87_MNPV Regulatory protein E2 OS=Rattus norvegicus papillomavirus 3 OX=1756445 GN=E2 PE=3 SV=1
MM1 pKa = 7.71EE2 pKa = 5.02SLCSRR7 pKa = 11.84LSAVQEE13 pKa = 3.99EE14 pKa = 4.78LMCIYY19 pKa = 10.74EE20 pKa = 4.28EE21 pKa = 4.55GDD23 pKa = 3.18RR24 pKa = 11.84TLATQVRR31 pKa = 11.84HH32 pKa = 4.56WQLIRR37 pKa = 11.84QEE39 pKa = 4.15QVLLHH44 pKa = 6.82AARR47 pKa = 11.84QQGHH51 pKa = 5.25TRR53 pKa = 11.84IGMQAVPSLAASQANAKK70 pKa = 9.65NAIEE74 pKa = 3.98MHH76 pKa = 6.77LLLQSLLQSPYY87 pKa = 11.13AKK89 pKa = 10.42EE90 pKa = 3.66PWTLSEE96 pKa = 4.13TSRR99 pKa = 11.84DD100 pKa = 3.64LYY102 pKa = 10.82LAPPSHH108 pKa = 6.09TLKK111 pKa = 10.86KK112 pKa = 10.05SGQTIEE118 pKa = 3.99VLFDD122 pKa = 3.77GDD124 pKa = 4.53EE125 pKa = 4.33NNSMQYY131 pKa = 9.58TKK133 pKa = 9.95WLQVFYY139 pKa = 10.79TDD141 pKa = 5.76DD142 pKa = 3.51RR143 pKa = 11.84GMWKK147 pKa = 9.99RR148 pKa = 11.84VPSVCDD154 pKa = 3.08ATGIFFDD161 pKa = 4.26RR162 pKa = 11.84NGHH165 pKa = 5.09RR166 pKa = 11.84EE167 pKa = 3.86YY168 pKa = 10.97YY169 pKa = 10.51VRR171 pKa = 11.84FEE173 pKa = 4.11KK174 pKa = 10.72EE175 pKa = 3.42AMRR178 pKa = 11.84FSVTGTWQAVDD189 pKa = 3.16EE190 pKa = 4.49GKK192 pKa = 10.19IYY194 pKa = 10.82SSVVPVASSTPTTGPPRR211 pKa = 11.84GPAVHH216 pKa = 7.29PDD218 pKa = 3.35GVSATGHH225 pKa = 6.16TSPNWDD231 pKa = 3.92CSRR234 pKa = 11.84HH235 pKa = 5.51SPLPSGGGEE244 pKa = 3.84DD245 pKa = 3.12SGEE248 pKa = 4.03EE249 pKa = 4.22EE250 pKa = 4.44KK251 pKa = 11.25VHH253 pKa = 5.74TRR255 pKa = 11.84PEE257 pKa = 4.37YY258 pKa = 10.12TDD260 pKa = 3.32HH261 pKa = 7.08SYY263 pKa = 11.19NRR265 pKa = 11.84QTSPPSFRR273 pKa = 11.84GEE275 pKa = 3.67QSVGGEE281 pKa = 3.85QHH283 pKa = 6.71RR284 pKa = 11.84EE285 pKa = 3.49RR286 pKa = 11.84ARR288 pKa = 11.84GLGVPAGDD296 pKa = 3.42VPEE299 pKa = 4.39VPRR302 pKa = 11.84AADD305 pKa = 3.71KK306 pKa = 7.79EE307 pKa = 4.86TKK309 pKa = 10.39SPEE312 pKa = 4.69PISKK316 pKa = 10.16RR317 pKa = 11.84GPGRR321 pKa = 11.84PRR323 pKa = 11.84KK324 pKa = 9.49GPSAAGEE331 pKa = 4.27TTTDD335 pKa = 3.37GEE337 pKa = 4.36PRR339 pKa = 11.84SKK341 pKa = 10.42KK342 pKa = 9.88RR343 pKa = 11.84PRR345 pKa = 11.84DD346 pKa = 3.27RR347 pKa = 11.84TGGYY351 pKa = 7.46RR352 pKa = 11.84TRR354 pKa = 11.84KK355 pKa = 8.91RR356 pKa = 11.84RR357 pKa = 11.84RR358 pKa = 11.84TKK360 pKa = 10.2RR361 pKa = 11.84WATPPRR367 pKa = 11.84EE368 pKa = 4.04RR369 pKa = 11.84GPDD372 pKa = 3.48HH373 pKa = 7.4VDD375 pKa = 3.69LNATNKK381 pKa = 10.32NEE383 pKa = 3.71GRR385 pKa = 11.84PNGPVNCSPPTPNPPDD401 pKa = 3.8LSAIPPTPGVRR412 pKa = 11.84VAGQSTPAGTSRR424 pKa = 11.84APPTLVAEE432 pKa = 4.69PDD434 pKa = 3.35AGRR437 pKa = 11.84TPAAAAAGLRR447 pKa = 11.84SATPGSTARR456 pKa = 11.84IRR458 pKa = 11.84RR459 pKa = 11.84PRR461 pKa = 11.84VGPGPPCLLIIKK473 pKa = 7.66GTPNGVKK480 pKa = 10.26CLRR483 pKa = 11.84YY484 pKa = 9.41RR485 pKa = 11.84LKK487 pKa = 9.26TQHH490 pKa = 7.0PSTFQFVSTTWQWVPATGSSRR511 pKa = 11.84VGRR514 pKa = 11.84ARR516 pKa = 11.84ILVMCSDD523 pKa = 3.33QTQRR527 pKa = 11.84NIFLDD532 pKa = 3.89TVKK535 pKa = 10.22IPAGMTVEE543 pKa = 4.2QCSMLAII550 pKa = 4.49

Molecular weight: 60.28 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1876

92

600

375.2

42.27

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.237 ± 0.716

2.719 ± 0.662

5.384 ± 0.509

6.397 ± 0.445

3.625 ± 0.711

6.716 ± 0.72

1.972 ± 0.186

3.945 ± 0.55

4.797 ± 0.498

8.102 ± 0.844

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.972 ± 0.308

4.211 ± 0.645

6.61 ± 1.228

4.478 ± 0.218

7.729 ± 0.921

7.409 ± 0.3

6.61 ± 0.566

6.183 ± 0.442

1.652 ± 0.208

3.252 ± 0.56
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski