Nonomuraea jiangxiensis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Streptosporangiales; Streptosporangiaceae; Nonomuraea

Average proteome isoelectric point is 6.52

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 10809 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1G9UM79|A0A1G9UM79_9ACTN Uncharacterized protein OS=Nonomuraea jiangxiensis OX=633440 GN=SAMN05421869_14917 PE=4 SV=1
MM1 pKa = 7.13TVVTHH6 pKa = 7.7DD7 pKa = 5.51DD8 pKa = 3.93DD9 pKa = 5.62FPWIYY14 pKa = 10.8NPYY17 pKa = 7.86WDD19 pKa = 4.7KK20 pKa = 11.21PEE22 pKa = 4.23PPIPFQKK29 pKa = 10.09VSGYY33 pKa = 9.59EE34 pKa = 3.33WVYY37 pKa = 10.85PDD39 pKa = 4.53KK40 pKa = 10.93TDD42 pKa = 4.3SDD44 pKa = 4.47GNYY47 pKa = 9.16IWAKK51 pKa = 10.73DD52 pKa = 3.82NSDD55 pKa = 3.69DD56 pKa = 4.26

Molecular weight: 6.7 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1G8FWG9|A0A1G8FWG9_9ACTN Bifunctional purine biosynthesis protein PurH OS=Nonomuraea jiangxiensis OX=633440 GN=purH PE=3 SV=1
MM1 pKa = 7.59LNGRR5 pKa = 11.84LTRR8 pKa = 11.84VLTGRR13 pKa = 11.84LTGVLARR20 pKa = 11.84EE21 pKa = 4.21LTGVLARR28 pKa = 11.84EE29 pKa = 4.35LSRR32 pKa = 11.84RR33 pKa = 11.84LTGMLSRR40 pKa = 11.84RR41 pKa = 11.84LSGRR45 pKa = 11.84LAHH48 pKa = 6.63RR49 pKa = 11.84PSGRR53 pKa = 11.84LARR56 pKa = 11.84LLSGRR61 pKa = 11.84LAPLLSRR68 pKa = 11.84RR69 pKa = 11.84LTRR72 pKa = 11.84VLSGRR77 pKa = 11.84LAGVLSGRR85 pKa = 11.84RR86 pKa = 11.84GKK88 pKa = 10.26LRR90 pKa = 11.84RR91 pKa = 11.84LHH93 pKa = 6.7RR94 pKa = 11.84GLGSGLRR101 pKa = 11.84RR102 pKa = 11.84RR103 pKa = 11.84SRR105 pKa = 11.84TRR107 pKa = 11.84SLL109 pKa = 3.2

Molecular weight: 12.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

10809

0

10809

3474277

27

5397

321.4

34.55

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.184 ± 0.037

0.762 ± 0.007

5.745 ± 0.019

5.557 ± 0.024

2.84 ± 0.014

9.33 ± 0.024

2.245 ± 0.013

3.571 ± 0.015

1.935 ± 0.019

10.643 ± 0.034

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.88 ± 0.009

1.845 ± 0.015

6.145 ± 0.02

2.752 ± 0.014

8.23 ± 0.024

5.006 ± 0.017

5.931 ± 0.019

8.623 ± 0.025

1.605 ± 0.011

2.169 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski