Panteoa phage Phynn

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Tevenvirinae; unclassified Tevenvirinae

Average proteome isoelectric point is 6.35

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 266 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A514A7I9|A0A514A7I9_9CAUD Metalloprotease OS=Panteoa phage Phynn OX=2589666 GN=68 PE=4 SV=1
MM1 pKa = 7.6NIFEE5 pKa = 5.36KK6 pKa = 9.83YY7 pKa = 8.23TAVADD12 pKa = 3.95LAGVDD17 pKa = 3.68EE18 pKa = 4.93NEE20 pKa = 4.54VFEE23 pKa = 4.77SPHH26 pKa = 5.07GSKK29 pKa = 10.07WIVAIDD35 pKa = 3.93DD36 pKa = 3.91MGCVHH41 pKa = 6.43VLEE44 pKa = 5.3RR45 pKa = 11.84PCLHH49 pKa = 7.56DD50 pKa = 5.19SFFEE54 pKa = 4.41CGNSAEE60 pKa = 5.16DD61 pKa = 2.92IGLPFEE67 pKa = 4.77TEE69 pKa = 3.8NSPGVYY75 pKa = 9.56EE76 pKa = 4.57WICDD80 pKa = 3.02ICYY83 pKa = 10.09QRR85 pKa = 11.84DD86 pKa = 3.48WEE88 pKa = 4.33SGYY91 pKa = 9.98IDD93 pKa = 3.1GWEE96 pKa = 4.02FEE98 pKa = 4.39VTEE101 pKa = 4.87EE102 pKa = 4.06KK103 pKa = 11.09LLWTWVKK110 pKa = 10.78DD111 pKa = 3.79GEE113 pKa = 4.22ADD115 pKa = 3.43EE116 pKa = 4.61VRR118 pKa = 11.84NKK120 pKa = 9.82EE121 pKa = 3.89AA122 pKa = 4.31

Molecular weight: 14.05 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A514A720|A0A514A720_9CAUD Uncharacterized protein OS=Panteoa phage Phynn OX=2589666 GN=224 PE=4 SV=1
MM1 pKa = 8.13KK2 pKa = 10.13YY3 pKa = 10.64RR4 pKa = 11.84NVQPYY9 pKa = 10.26RR10 pKa = 11.84IINLAHH16 pKa = 6.3CEE18 pKa = 3.99VRR20 pKa = 11.84RR21 pKa = 11.84KK22 pKa = 10.27NSAINTSVEE31 pKa = 3.95RR32 pKa = 11.84NTNITEE38 pKa = 4.0NTMFNYY44 pKa = 10.59GIIFLLIALVAAALGFGFLAGVAATAAKK72 pKa = 9.82IVFIVGIILFIASLFRR88 pKa = 11.84GTKK91 pKa = 9.52PRR93 pKa = 11.84DD94 pKa = 3.4VLL96 pKa = 3.82

Molecular weight: 10.62 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

266

0

266

55506

22

1223

208.7

23.54

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.082 ± 0.178

1.07 ± 0.064

6.491 ± 0.112

6.688 ± 0.185

4.118 ± 0.103

6.37 ± 0.189

1.69 ± 0.067

6.511 ± 0.115

7.079 ± 0.173

7.639 ± 0.139

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.848 ± 0.085

5.212 ± 0.129

3.641 ± 0.095

3.409 ± 0.115

4.962 ± 0.096

6.733 ± 0.139

5.967 ± 0.198

7.102 ± 0.119

1.297 ± 0.056

4.091 ± 0.108
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski