Litorimonas taeanensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Maricaulales; Robiginitomaculaceae; Litorimonas

Average proteome isoelectric point is 6.32

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2552 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A420WDM2|A0A420WDM2_9PROT RHS repeat-associated protein OS=Litorimonas taeanensis OX=568099 GN=DES40_1920 PE=4 SV=1
MM1 pKa = 7.62KK2 pKa = 10.2FLKK5 pKa = 8.23TTIATLALTGFAGQAMAQDD24 pKa = 3.74TGAYY28 pKa = 6.7GTLGVSTYY36 pKa = 11.05EE37 pKa = 3.52FDD39 pKa = 3.55TYY41 pKa = 11.34NITGRR46 pKa = 11.84LGYY49 pKa = 10.27NLNEE53 pKa = 3.91YY54 pKa = 10.43FGIEE58 pKa = 4.25GEE60 pKa = 4.29GSIGVIGEE68 pKa = 4.18DD69 pKa = 3.65DD70 pKa = 3.79NGVEE74 pKa = 6.11VDD76 pKa = 3.96TEE78 pKa = 4.13WDD80 pKa = 3.14LGAYY84 pKa = 9.15AVARR88 pKa = 11.84LPLSNQFEE96 pKa = 4.38AFVRR100 pKa = 11.84GGYY103 pKa = 7.63TVVSVEE109 pKa = 3.88ATVAGVTDD117 pKa = 3.52SDD119 pKa = 4.0EE120 pKa = 4.3VDD122 pKa = 3.92GYY124 pKa = 11.76AVGGGVQYY132 pKa = 11.35NLNDD136 pKa = 3.57RR137 pKa = 11.84SGLRR141 pKa = 11.84LGYY144 pKa = 8.64TYY146 pKa = 11.2KK147 pKa = 10.99DD148 pKa = 3.17GDD150 pKa = 4.25LNGVDD155 pKa = 5.04LDD157 pKa = 4.18ADD159 pKa = 3.76VWDD162 pKa = 3.6VSYY165 pKa = 11.32VRR167 pKa = 11.84KK168 pKa = 9.65FF169 pKa = 3.06

Molecular weight: 18.13 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A420WE23|A0A420WE23_9PROT Peptidase M28-like protein OS=Litorimonas taeanensis OX=568099 GN=DES40_1947 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLVRR12 pKa = 11.84KK13 pKa = 9.18RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.63GFRR19 pKa = 11.84SRR21 pKa = 11.84MATKK25 pKa = 10.29AGRR28 pKa = 11.84QILSRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.0GRR39 pKa = 11.84KK40 pKa = 8.67VLSAA44 pKa = 4.05

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2552

0

2552

835630

29

3046

327.4

35.94

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.013 ± 0.057

0.84 ± 0.014

6.038 ± 0.038

6.14 ± 0.052

4.07 ± 0.042

7.812 ± 0.051

1.878 ± 0.024

6.222 ± 0.04

5.06 ± 0.051

9.498 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.557 ± 0.03

3.774 ± 0.036

4.548 ± 0.035

3.423 ± 0.029

5.466 ± 0.038

6.488 ± 0.036

5.713 ± 0.053

6.555 ± 0.057

1.144 ± 0.017

2.759 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski