archaeon HR06

Taxonomy: cellular organisms; Archaea; unclassified Archaea

Average proteome isoelectric point is 7.48

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1118 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2H5VFK0|A0A2H5VFK0_9ARCH Inner membrane ABC transporter permease protein YcjP OS=archaeon HR06 OX=2035442 GN=ycjP_4 PE=3 SV=1
MM1 pKa = 7.89SLEE4 pKa = 4.47CLDD7 pKa = 4.36CGGSIKK13 pKa = 10.23IPKK16 pKa = 9.28DD17 pKa = 3.61AIAGEE22 pKa = 4.48VLTCPDD28 pKa = 4.2CGSSFEE34 pKa = 4.33LVKK37 pKa = 10.88DD38 pKa = 3.71EE39 pKa = 5.64KK40 pKa = 11.32GFSLKK45 pKa = 10.02FAQVEE50 pKa = 4.32GEE52 pKa = 4.2DD53 pKa = 3.28WGEE56 pKa = 3.68

Molecular weight: 5.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2H5VEL1|A0A2H5VEL1_9ARCH Bifunctional protein HldE OS=archaeon HR06 OX=2035442 GN=hldE_1 PE=4 SV=1
MM1 pKa = 7.15PTHH4 pKa = 6.98GSLTKK9 pKa = 10.14AGKK12 pKa = 9.72VRR14 pKa = 11.84SQTPKK19 pKa = 8.54IPARR23 pKa = 11.84PRR25 pKa = 11.84HH26 pKa = 5.32SPIPKK31 pKa = 9.21VRR33 pKa = 11.84LKK35 pKa = 11.05SIFVKK40 pKa = 10.65RR41 pKa = 11.84NILKK45 pKa = 10.4RR46 pKa = 11.84KK47 pKa = 9.19PGQNWINVV55 pKa = 3.56

Molecular weight: 6.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1118

0

1118

263615

29

1009

235.8

26.83

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.583 ± 0.076

0.977 ± 0.032

4.762 ± 0.045

7.955 ± 0.081

4.81 ± 0.075

6.503 ± 0.058

1.303 ± 0.026

9.199 ± 0.069

9.522 ± 0.096

11.755 ± 0.11

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.056 ± 0.03

4.132 ± 0.048

3.859 ± 0.052

1.676 ± 0.034

4.718 ± 0.055

5.926 ± 0.063

3.961 ± 0.074

6.284 ± 0.067

1.044 ± 0.034

3.974 ± 0.047
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski