Amino acid dipepetide frequency for Garlic common latent virus

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.986AlaAla: 4.986 ± 3.19
1.068AlaCys: 1.068 ± 1.041
4.63AlaAsp: 4.63 ± 1.765
5.342AlaGlu: 5.342 ± 1.981
3.561AlaPhe: 3.561 ± 1.49
3.561AlaGly: 3.561 ± 0.705
1.068AlaHis: 1.068 ± 0.489
5.342AlaIle: 5.342 ± 4.059
5.342AlaLys: 5.342 ± 2.18
6.41AlaLeu: 6.41 ± 1.663
1.068AlaMet: 1.068 ± 0.649
2.849AlaAsn: 2.849 ± 1.52
3.205AlaPro: 3.205 ± 1.04
1.781AlaGln: 1.781 ± 0.995
5.342AlaArg: 5.342 ± 1.863
5.698AlaSer: 5.698 ± 2.535
3.561AlaThr: 3.561 ± 1.037
5.698AlaVal: 5.698 ± 2.057
0.712AlaTrp: 0.712 ± 0.398
3.205AlaTyr: 3.205 ± 1.306
0.0AlaXaa: 0.0 ± 0.0
Cys
2.493CysAla: 2.493 ± 0.848
1.068CysCys: 1.068 ± 0.597
1.068CysAsp: 1.068 ± 0.599
1.425CysGlu: 1.425 ± 0.947
2.849CysPhe: 2.849 ± 1.592
3.561CysGly: 3.561 ± 2.037
0.712CysHis: 0.712 ± 0.65
2.493CysIle: 2.493 ± 1.179
0.712CysLys: 0.712 ± 0.398
1.781CysLeu: 1.781 ± 1.179
0.712CysMet: 0.712 ± 0.398
0.0CysAsn: 0.0 ± 0.0
0.356CysPro: 0.356 ± 0.199
1.068CysGln: 1.068 ± 0.597
1.781CysArg: 1.781 ± 0.566
3.561CysSer: 3.561 ± 1.836
2.137CysThr: 2.137 ± 0.936
2.493CysVal: 2.493 ± 0.846
0.356CysTrp: 0.356 ± 0.689
0.712CysTyr: 0.712 ± 0.398
0.0CysXaa: 0.0 ± 0.0
Asp
4.274AspAla: 4.274 ± 1.862
1.068AspCys: 1.068 ± 0.581
1.068AspAsp: 1.068 ± 0.597
4.274AspGlu: 4.274 ± 1.034
3.917AspPhe: 3.917 ± 0.792
4.274AspGly: 4.274 ± 1.895
0.356AspHis: 0.356 ± 0.199
1.781AspIle: 1.781 ± 1.273
1.068AspLys: 1.068 ± 0.597
5.342AspLeu: 5.342 ± 0.955
1.425AspMet: 1.425 ± 0.493
3.205AspAsn: 3.205 ± 1.595
1.425AspPro: 1.425 ± 0.878
1.425AspGln: 1.425 ± 0.796
1.425AspArg: 1.425 ± 0.49
2.493AspSer: 2.493 ± 1.32
2.849AspThr: 2.849 ± 2.254
4.986AspVal: 4.986 ± 0.871
1.068AspTrp: 1.068 ± 0.581
2.849AspTyr: 2.849 ± 0.627
0.0AspXaa: 0.0 ± 0.0
Glu
5.342GluAla: 5.342 ± 1.107
1.425GluCys: 1.425 ± 0.614
2.493GluAsp: 2.493 ± 1.033
4.63GluGlu: 4.63 ± 1.131
3.205GluPhe: 3.205 ± 0.989
3.561GluGly: 3.561 ± 0.822
1.068GluHis: 1.068 ± 0.597
3.561GluIle: 3.561 ± 0.742
4.274GluLys: 4.274 ± 1.83
5.342GluLeu: 5.342 ± 2.134
1.781GluMet: 1.781 ± 0.566
1.068GluAsn: 1.068 ± 1.005
3.917GluPro: 3.917 ± 0.568
3.561GluGln: 3.561 ± 0.995
6.766GluArg: 6.766 ± 0.906
3.205GluSer: 3.205 ± 1.514
2.849GluThr: 2.849 ± 0.808
3.917GluVal: 3.917 ± 1.445
0.712GluTrp: 0.712 ± 0.614
1.425GluTyr: 1.425 ± 1.325
0.0GluXaa: 0.0 ± 0.0
Phe
2.493PheAla: 2.493 ± 0.848
1.781PheCys: 1.781 ± 0.566
6.054PheAsp: 6.054 ± 1.179
7.123PheGlu: 7.123 ± 1.72
2.137PhePhe: 2.137 ± 1.194
2.493PheGly: 2.493 ± 2.207
1.068PheHis: 1.068 ± 0.597
2.137PheIle: 2.137 ± 0.855
2.137PheLys: 2.137 ± 0.693
6.054PheLeu: 6.054 ± 2.137
2.137PheMet: 2.137 ± 0.951
2.493PheAsn: 2.493 ± 1.189
1.068PhePro: 1.068 ± 0.597
3.205PheGln: 3.205 ± 1.197
1.781PheArg: 1.781 ± 0.995
6.41PheSer: 6.41 ± 2.435
3.205PheThr: 3.205 ± 0.744
3.205PheVal: 3.205 ± 1.36
0.356PheTrp: 0.356 ± 0.199
1.068PheTyr: 1.068 ± 0.597
0.0PheXaa: 0.0 ± 0.0
Gly
4.274GlyAla: 4.274 ± 0.997
3.917GlyCys: 3.917 ± 1.146
4.63GlyAsp: 4.63 ± 1.59
3.561GlyGlu: 3.561 ± 1.095
1.425GlyPhe: 1.425 ± 0.49
3.205GlyGly: 3.205 ± 1.6
0.712GlyHis: 0.712 ± 0.398
2.849GlyIle: 2.849 ± 0.706
2.493GlyLys: 2.493 ± 1.448
6.766GlyLeu: 6.766 ± 1.512
0.356GlyMet: 0.356 ± 0.689
1.068GlyAsn: 1.068 ± 0.597
3.205GlyPro: 3.205 ± 1.085
0.356GlyGln: 0.356 ± 0.199
3.917GlyArg: 3.917 ± 0.93
4.986GlySer: 4.986 ± 1.596
2.849GlyThr: 2.849 ± 0.92
7.835GlyVal: 7.835 ± 2.029
1.425GlyTrp: 1.425 ± 0.49
1.781GlyTyr: 1.781 ± 0.525
0.0GlyXaa: 0.0 ± 0.0
His
1.068HisAla: 1.068 ± 0.792
1.425HisCys: 1.425 ± 0.796
1.068HisAsp: 1.068 ± 0.597
0.356HisGlu: 0.356 ± 0.199
1.068HisPhe: 1.068 ± 0.581
1.425HisGly: 1.425 ± 0.8
0.712HisHis: 0.712 ± 0.398
0.356HisIle: 0.356 ± 0.199
1.068HisLys: 1.068 ± 0.599
3.561HisLeu: 3.561 ± 1.408
1.425HisMet: 1.425 ± 0.49
0.712HisAsn: 0.712 ± 0.614
0.356HisPro: 0.356 ± 0.199
1.425HisGln: 1.425 ± 0.796
2.137HisArg: 2.137 ± 1.019
2.849HisSer: 2.849 ± 1.218
0.0HisThr: 0.0 ± 0.0
1.781HisVal: 1.781 ± 0.856
0.356HisTrp: 0.356 ± 0.835
1.068HisTyr: 1.068 ± 0.599
0.0HisXaa: 0.0 ± 0.0
Ile
7.479IleAla: 7.479 ± 2.763
1.781IleCys: 1.781 ± 0.704
4.274IleAsp: 4.274 ± 0.812
2.849IleGlu: 2.849 ± 0.899
2.849IlePhe: 2.849 ± 1.151
2.493IleGly: 2.493 ± 1.161
0.712IleHis: 0.712 ± 0.614
4.63IleIle: 4.63 ± 4.225
3.917IleLys: 3.917 ± 2.022
3.917IleLeu: 3.917 ± 1.74
1.425IleMet: 1.425 ± 0.796
0.356IleAsn: 0.356 ± 0.917
0.356IlePro: 0.356 ± 0.199
1.068IleGln: 1.068 ± 1.307
3.561IleArg: 3.561 ± 2.14
3.205IleSer: 3.205 ± 1.283
4.274IleThr: 4.274 ± 2.037
1.781IleVal: 1.781 ± 1.61
0.356IleTrp: 0.356 ± 0.199
1.425IleTyr: 1.425 ± 0.959
0.0IleXaa: 0.0 ± 0.0
Lys
2.849LysAla: 2.849 ± 0.748
0.712LysCys: 0.712 ± 1.504
1.068LysAsp: 1.068 ± 1.005
3.205LysGlu: 3.205 ± 0.796
4.274LysPhe: 4.274 ± 1.385
3.561LysGly: 3.561 ± 1.132
1.781LysHis: 1.781 ± 0.826
1.425LysIle: 1.425 ± 0.796
1.781LysLys: 1.781 ± 0.566
8.547LysLeu: 8.547 ± 1.719
1.068LysMet: 1.068 ± 0.597
2.137LysAsn: 2.137 ± 1.778
3.205LysPro: 3.205 ± 1.306
0.712LysGln: 0.712 ± 0.65
3.561LysArg: 3.561 ± 1.695
3.561LysSer: 3.561 ± 1.194
2.849LysThr: 2.849 ± 0.797
3.917LysVal: 3.917 ± 2.189
0.712LysTrp: 0.712 ± 0.614
1.781LysTyr: 1.781 ± 0.754
0.0LysXaa: 0.0 ± 0.0
Leu
6.766LeuAla: 6.766 ± 1.262
3.205LeuCys: 3.205 ± 1.312
3.561LeuAsp: 3.561 ± 1.382
8.191LeuGlu: 8.191 ± 2.18
4.63LeuPhe: 4.63 ± 1.69
7.479LeuGly: 7.479 ± 2.919
3.205LeuHis: 3.205 ± 1.375
5.342LeuIle: 5.342 ± 0.74
5.342LeuLys: 5.342 ± 1.748
11.396LeuLeu: 11.396 ± 4.301
0.356LeuMet: 0.356 ± 0.199
4.274LeuAsn: 4.274 ± 0.705
4.63LeuPro: 4.63 ± 2.442
3.917LeuGln: 3.917 ± 1.75
6.766LeuArg: 6.766 ± 1.333
5.342LeuSer: 5.342 ± 1.529
6.766LeuThr: 6.766 ± 3.631
6.41LeuVal: 6.41 ± 1.148
0.356LeuTrp: 0.356 ± 0.199
1.425LeuTyr: 1.425 ± 0.614
0.0LeuXaa: 0.0 ± 0.0
Met
1.425MetAla: 1.425 ± 0.796
1.068MetCys: 1.068 ± 0.597
2.137MetAsp: 2.137 ± 0.914
1.068MetGlu: 1.068 ± 1.005
0.356MetPhe: 0.356 ± 0.689
1.425MetGly: 1.425 ± 0.796
0.712MetHis: 0.712 ± 0.398
0.0MetIle: 0.0 ± 0.0
0.712MetLys: 0.712 ± 0.398
1.781MetLeu: 1.781 ± 0.798
0.0MetMet: 0.0 ± 0.0
0.0MetAsn: 0.0 ± 0.0
1.425MetPro: 1.425 ± 0.8
0.712MetGln: 0.712 ± 0.398
1.781MetArg: 1.781 ± 0.826
0.712MetSer: 0.712 ± 0.563
1.781MetThr: 1.781 ± 1.036
1.425MetVal: 1.425 ± 0.796
0.0MetTrp: 0.0 ± 0.0
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
1.781AsnAla: 1.781 ± 0.566
1.068AsnCys: 1.068 ± 0.581
1.425AsnAsp: 1.425 ± 1.127
1.068AsnGlu: 1.068 ± 0.489
3.205AsnPhe: 3.205 ± 0.661
2.493AsnGly: 2.493 ± 2.199
1.068AsnHis: 1.068 ± 0.597
0.712AsnIle: 0.712 ± 0.563
3.561AsnLys: 3.561 ± 2.169
4.274AsnLeu: 4.274 ± 1.47
1.425AsnMet: 1.425 ± 0.866
1.068AsnAsn: 1.068 ± 0.489
1.425AsnPro: 1.425 ± 0.866
0.712AsnGln: 0.712 ± 0.65
2.493AsnArg: 2.493 ± 0.445
2.137AsnSer: 2.137 ± 1.258
1.425AsnThr: 1.425 ± 0.8
2.137AsnVal: 2.137 ± 0.693
0.0AsnTrp: 0.0 ± 0.0
1.425AsnTyr: 1.425 ± 1.667
0.0AsnXaa: 0.0 ± 0.0
Pro
2.849ProAla: 2.849 ± 0.98
1.425ProCys: 1.425 ± 0.796
2.849ProAsp: 2.849 ± 1.108
2.493ProGlu: 2.493 ± 1.179
1.781ProPhe: 1.781 ± 0.995
2.493ProGly: 2.493 ± 0.445
2.493ProHis: 2.493 ± 1.728
2.137ProIle: 2.137 ± 2.658
1.781ProLys: 1.781 ± 1.036
2.493ProLeu: 2.493 ± 1.393
0.356ProMet: 0.356 ± 0.199
1.425ProAsn: 1.425 ± 0.796
2.493ProPro: 2.493 ± 1.557
1.781ProGln: 1.781 ± 0.685
2.849ProArg: 2.849 ± 1.218
1.068ProSer: 1.068 ± 1.041
3.917ProThr: 3.917 ± 1.425
2.493ProVal: 2.493 ± 0.848
0.356ProTrp: 0.356 ± 0.199
1.068ProTyr: 1.068 ± 0.597
0.0ProXaa: 0.0 ± 0.0
Gln
2.493GlnAla: 2.493 ± 0.959
0.712GlnCys: 0.712 ± 0.398
1.068GlnAsp: 1.068 ± 1.243
1.781GlnGlu: 1.781 ± 0.754
0.712GlnPhe: 0.712 ± 0.398
2.493GlnGly: 2.493 ± 1.179
1.068GlnHis: 1.068 ± 0.597
2.849GlnIle: 2.849 ± 0.82
1.425GlnLys: 1.425 ± 0.796
3.561GlnLeu: 3.561 ± 0.822
1.068GlnMet: 1.068 ± 0.489
0.712GlnAsn: 0.712 ± 0.398
1.068GlnPro: 1.068 ± 0.489
0.356GlnGln: 0.356 ± 0.199
2.493GlnArg: 2.493 ± 2.461
2.493GlnSer: 2.493 ± 0.761
1.425GlnThr: 1.425 ± 0.866
2.137GlnVal: 2.137 ± 0.832
0.356GlnTrp: 0.356 ± 0.199
1.068GlnTyr: 1.068 ± 0.597
0.0GlnXaa: 0.0 ± 0.0
Arg
5.698ArgAla: 5.698 ± 1.829
1.068ArgCys: 1.068 ± 1.207
3.917ArgAsp: 3.917 ± 0.673
2.493ArgGlu: 2.493 ± 1.331
6.054ArgPhe: 6.054 ± 1.05
3.917ArgGly: 3.917 ± 1.009
1.781ArgHis: 1.781 ± 0.525
2.493ArgIle: 2.493 ± 0.848
4.63ArgLys: 4.63 ± 1.244
4.63ArgLeu: 4.63 ± 1.565
0.712ArgMet: 0.712 ± 0.398
1.425ArgAsn: 1.425 ± 1.263
1.781ArgPro: 1.781 ± 2.026
1.781ArgGln: 1.781 ± 2.244
4.63ArgArg: 4.63 ± 2.35
5.698ArgSer: 5.698 ± 1.794
3.205ArgThr: 3.205 ± 1.327
4.63ArgVal: 4.63 ± 1.706
1.068ArgTrp: 1.068 ± 0.597
3.561ArgTyr: 3.561 ± 0.921
0.0ArgXaa: 0.0 ± 0.0
Ser
4.63SerAla: 4.63 ± 0.82
2.849SerCys: 2.849 ± 1.226
3.205SerAsp: 3.205 ± 1.28
4.63SerGlu: 4.63 ± 1.976
4.986SerPhe: 4.986 ± 1.97
3.205SerGly: 3.205 ± 0.989
2.493SerHis: 2.493 ± 1.775
3.917SerIle: 3.917 ± 2.248
6.054SerLys: 6.054 ± 2.477
6.766SerLeu: 6.766 ± 1.433
1.425SerMet: 1.425 ± 0.577
3.917SerAsn: 3.917 ± 0.835
1.425SerPro: 1.425 ± 0.796
1.425SerGln: 1.425 ± 0.796
3.205SerArg: 3.205 ± 2.315
6.766SerSer: 6.766 ± 2.846
6.41SerThr: 6.41 ± 1.313
2.137SerVal: 2.137 ± 1.154
0.0SerTrp: 0.0 ± 0.0
2.849SerTyr: 2.849 ± 0.748
0.0SerXaa: 0.0 ± 0.0
Thr
4.63ThrAla: 4.63 ± 1.907
1.425ThrCys: 1.425 ± 0.947
2.849ThrAsp: 2.849 ± 2.9
2.849ThrGlu: 2.849 ± 1.295
6.766ThrPhe: 6.766 ± 1.181
3.917ThrGly: 3.917 ± 1.221
0.356ThrHis: 0.356 ± 0.199
5.698ThrIle: 5.698 ± 2.247
2.137ThrLys: 2.137 ± 2.442
4.63ThrLeu: 4.63 ± 1.947
0.712ThrMet: 0.712 ± 0.398
4.274ThrAsn: 4.274 ± 1.333
1.068ThrPro: 1.068 ± 0.729
1.425ThrGln: 1.425 ± 0.612
3.917ThrArg: 3.917 ± 1.822
6.054ThrSer: 6.054 ± 1.528
2.849ThrThr: 2.849 ± 1.808
2.493ThrVal: 2.493 ± 1.393
0.356ThrTrp: 0.356 ± 0.199
1.781ThrTyr: 1.781 ± 0.995
0.0ThrXaa: 0.0 ± 0.0
Val
6.766ValAla: 6.766 ± 2.406
2.493ValCys: 2.493 ± 0.985
1.425ValAsp: 1.425 ± 0.49
4.63ValGlu: 4.63 ± 1.743
3.205ValPhe: 3.205 ± 1.197
4.274ValGly: 4.274 ± 1.901
1.781ValHis: 1.781 ± 0.826
3.205ValIle: 3.205 ± 0.744
2.137ValLys: 2.137 ± 0.802
7.123ValLeu: 7.123 ± 2.278
0.356ValMet: 0.356 ± 0.629
1.781ValAsn: 1.781 ± 1.273
3.917ValPro: 3.917 ± 1.802
3.205ValGln: 3.205 ± 1.468
4.274ValArg: 4.274 ± 0.677
4.274ValSer: 4.274 ± 1.313
4.986ValThr: 4.986 ± 2.065
5.342ValVal: 5.342 ± 0.956
0.356ValTrp: 0.356 ± 0.689
1.781ValTyr: 1.781 ± 0.566
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.712TrpCys: 0.712 ± 0.398
0.356TrpAsp: 0.356 ± 0.199
0.356TrpGlu: 0.356 ± 0.199
0.712TrpPhe: 0.712 ± 0.398
0.356TrpGly: 0.356 ± 0.199
0.356TrpHis: 0.356 ± 0.199
0.356TrpIle: 0.356 ± 0.199
0.712TrpLys: 0.712 ± 0.398
1.425TrpLeu: 1.425 ± 0.614
0.356TrpMet: 0.356 ± 0.688
0.712TrpAsn: 0.712 ± 0.563
0.0TrpPro: 0.0 ± 0.0
0.356TrpGln: 0.356 ± 0.689
0.356TrpArg: 0.356 ± 0.704
0.712TrpSer: 0.712 ± 0.563
0.0TrpThr: 0.0 ± 0.0
0.712TrpVal: 0.712 ± 0.398
0.0TrpTrp: 0.0 ± 0.0
0.712TrpTyr: 0.712 ± 0.614
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.137TyrAla: 2.137 ± 1.419
1.068TyrCys: 1.068 ± 1.041
1.425TyrAsp: 1.425 ± 0.796
1.781TyrGlu: 1.781 ± 0.685
0.712TyrPhe: 0.712 ± 0.398
1.425TyrGly: 1.425 ± 1.599
0.712TyrHis: 0.712 ± 0.398
1.425TyrIle: 1.425 ± 0.796
1.425TyrLys: 1.425 ± 0.796
3.561TyrLeu: 3.561 ± 1.224
0.0TyrMet: 0.0 ± 0.0
1.425TyrAsn: 1.425 ± 0.796
4.274TyrPro: 4.274 ± 1.251
1.068TyrGln: 1.068 ± 1.307
2.137TyrArg: 2.137 ± 0.951
1.068TyrSer: 1.068 ± 0.996
2.849TyrThr: 2.849 ± 0.797
2.137TyrVal: 2.137 ± 0.978
0.356TyrTrp: 0.356 ± 0.199
0.0TyrTyr: 0.0 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 6 proteins (2809 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski