Paenibacillus faecis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus

Average proteome isoelectric point is 6.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5445 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5D0CYE7|A0A5D0CYE7_9BACL Type II/IV secretion system ATPase subunit OS=Paenibacillus faecis OX=862114 GN=FRY98_03575 PE=3 SV=1
MM1 pKa = 7.35EE2 pKa = 4.03TTICPWCQTEE12 pKa = 4.32IVWDD16 pKa = 3.91EE17 pKa = 3.83EE18 pKa = 4.19LGPEE22 pKa = 4.22EE23 pKa = 4.24EE24 pKa = 5.69CPYY27 pKa = 10.62CHH29 pKa = 7.08NEE31 pKa = 3.65LKK33 pKa = 10.51GYY35 pKa = 7.56RR36 pKa = 11.84TLNISLGSAEE46 pKa = 4.02EE47 pKa = 4.19LEE49 pKa = 4.62EE50 pKa = 3.96EE51 pKa = 4.57VEE53 pKa = 4.09ADD55 pKa = 3.65EE56 pKa = 5.82EE57 pKa = 5.01ADD59 pKa = 3.39TDD61 pKa = 3.44LWEE64 pKa = 4.45EE65 pKa = 4.44DD66 pKa = 4.0EE67 pKa = 4.68EE68 pKa = 4.78SHH70 pKa = 7.1LNAIRR75 pKa = 11.84RR76 pKa = 11.84LEE78 pKa = 4.08SFAAAGGDD86 pKa = 3.48LLAYY90 pKa = 9.69EE91 pKa = 4.57SGVEE95 pKa = 4.63KK96 pKa = 10.55ILDD99 pKa = 4.11GQDD102 pKa = 3.98EE103 pKa = 4.5IPEE106 pKa = 4.48CPHH109 pKa = 6.03CRR111 pKa = 11.84EE112 pKa = 3.94YY113 pKa = 11.28MMFAGTQPLGADD125 pKa = 4.27FEE127 pKa = 4.71PAGQEE132 pKa = 4.07AVEE135 pKa = 4.21QPLVAGTAKK144 pKa = 10.76LNVFVCSACFHH155 pKa = 5.99VSKK158 pKa = 10.47FLSEE162 pKa = 4.42DD163 pKa = 3.26DD164 pKa = 3.71RR165 pKa = 11.84NALIRR170 pKa = 11.84TVSGQQ175 pKa = 3.0

Molecular weight: 19.49 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5D0CRB5|A0A5D0CRB5_9BACL Uncharacterized protein OS=Paenibacillus faecis OX=862114 GN=FRY98_21165 PE=4 SV=1
MM1 pKa = 7.59KK2 pKa = 8.7PTFKK6 pKa = 10.81PNVSKK11 pKa = 10.8RR12 pKa = 11.84KK13 pKa = 8.95KK14 pKa = 8.25VHH16 pKa = 5.49GFRR19 pKa = 11.84KK20 pKa = 10.01RR21 pKa = 11.84MSTKK25 pKa = 10.18NGRR28 pKa = 11.84KK29 pKa = 8.78VLAARR34 pKa = 11.84RR35 pKa = 11.84QKK37 pKa = 10.23GRR39 pKa = 11.84KK40 pKa = 8.56VLSAA44 pKa = 4.05

Molecular weight: 5.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5445

0

5445

1785304

25

5282

327.9

36.53

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.48 ± 0.041

0.75 ± 0.01

5.096 ± 0.029

7.161 ± 0.036

4.15 ± 0.029

7.837 ± 0.035

2.001 ± 0.019

6.266 ± 0.032

5.311 ± 0.031

10.28 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.734 ± 0.014

3.541 ± 0.026

4.224 ± 0.025

3.584 ± 0.021

5.601 ± 0.035

5.996 ± 0.024

5.213 ± 0.025

7.01 ± 0.026

1.273 ± 0.015

3.491 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski