Nonlabens sediminis

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Nonlabens

Average proteome isoelectric point is 6.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2951 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A090PXP2|A0A090PXP2_9FLAO Uncharacterized protein OS=Nonlabens sediminis OX=319236 GN=JCM19294_2287 PE=4 SV=1
MM1 pKa = 7.2VSCDD5 pKa = 3.79EE6 pKa = 5.69DD7 pKa = 3.67PTLSNDD13 pKa = 3.4QNQGDD18 pKa = 4.52DD19 pKa = 5.09DD20 pKa = 3.9ITTIDD25 pKa = 3.68DD26 pKa = 3.83KK27 pKa = 11.79VRR29 pKa = 11.84LSSIQIAEE37 pKa = 4.11NTASNIVTNIDD48 pKa = 2.79IVYY51 pKa = 10.7DD52 pKa = 3.65NDD54 pKa = 3.41NLISEE59 pKa = 4.73IVFSGQQSKK68 pKa = 8.6TYY70 pKa = 9.77QFQYY74 pKa = 11.06APNNQVINYY83 pKa = 7.26TKK85 pKa = 10.11IEE87 pKa = 4.06NQSTSSYY94 pKa = 10.22SIEE97 pKa = 3.84YY98 pKa = 9.91DD99 pKa = 3.4EE100 pKa = 6.26NIITSSNVSNPNQIQQFEE118 pKa = 4.16IDD120 pKa = 3.26NFNRR124 pKa = 11.84VDD126 pKa = 4.15EE127 pKa = 4.44ILSRR131 pKa = 11.84TTSSNGSVIQEE142 pKa = 3.85NSEE145 pKa = 4.1VFDD148 pKa = 3.74INANFNIEE156 pKa = 4.28RR157 pKa = 11.84ITYY160 pKa = 10.13LEE162 pKa = 4.16NNNTTGFSDD171 pKa = 3.77FTYY174 pKa = 10.53EE175 pKa = 5.24LNDD178 pKa = 4.02NPFKK182 pKa = 11.22DD183 pKa = 3.54MNDD186 pKa = 3.67IIRR189 pKa = 11.84LLVFKK194 pKa = 10.58DD195 pKa = 5.35FIPSSRR201 pKa = 11.84FLPLTQEE208 pKa = 4.46EE209 pKa = 5.43YY210 pKa = 9.36DD211 pKa = 3.58TSTGSIQLVQEE222 pKa = 4.19MIYY225 pKa = 9.99TYY227 pKa = 11.0NLNSEE232 pKa = 4.29GMPVSRR238 pKa = 11.84EE239 pKa = 3.33ISTTNNGISSTSYY252 pKa = 11.5NLFSYY257 pKa = 10.51LL258 pKa = 3.99

Molecular weight: 29.39 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A090Q4B2|A0A090Q4B2_9FLAO Sulf_transp domain-containing protein OS=Nonlabens sediminis OX=319236 GN=JCM19294_1556 PE=3 SV=1
MM1 pKa = 7.6KK2 pKa = 10.46KK3 pKa = 9.83LLKK6 pKa = 10.03YY7 pKa = 10.27SVYY10 pKa = 10.06IYY12 pKa = 10.45LIFAIVCLITAITEE26 pKa = 4.23WNVEE30 pKa = 3.78RR31 pKa = 11.84SRR33 pKa = 11.84AYY35 pKa = 11.3LMLFMAAVALFMFFFRR51 pKa = 11.84RR52 pKa = 11.84RR53 pKa = 11.84FIRR56 pKa = 11.84RR57 pKa = 11.84FDD59 pKa = 3.92DD60 pKa = 3.47RR61 pKa = 11.84NKK63 pKa = 10.95

Molecular weight: 7.81 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2951

0

2951

886951

37

2417

300.6

33.91

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.462 ± 0.042

0.724 ± 0.015

6.027 ± 0.044

6.437 ± 0.047

4.892 ± 0.035

6.369 ± 0.045

1.856 ± 0.023

7.616 ± 0.042

6.978 ± 0.07

9.186 ± 0.062

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.249 ± 0.031

6.044 ± 0.056

3.456 ± 0.029

3.87 ± 0.031

3.833 ± 0.032

6.575 ± 0.044

5.845 ± 0.054

6.379 ± 0.034

1.079 ± 0.017

4.123 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski