Xanthomonadaceae bacterium

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; unclassified Xanthomonadaceae

Average proteome isoelectric point is 6.69

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3169 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Q6C7C1|A0A4Q6C7C1_9GAMM TerC family protein (Fragment) OS=Xanthomonadaceae bacterium OX=1926873 GN=EOP91_07615 PE=4 SV=1
MM1 pKa = 7.68TDD3 pKa = 3.03STDD6 pKa = 3.15ARR8 pKa = 11.84YY9 pKa = 7.35QTWMCVVCGFIYY21 pKa = 10.67DD22 pKa = 3.87EE23 pKa = 4.55AKK25 pKa = 10.57GLPEE29 pKa = 4.53EE30 pKa = 4.68GLAPGTRR37 pKa = 11.84WKK39 pKa = 10.41DD40 pKa = 3.32IPDD43 pKa = 3.11SWTCPDD49 pKa = 4.16CGVGKK54 pKa = 10.25DD55 pKa = 3.81DD56 pKa = 4.93FEE58 pKa = 4.83MIEE61 pKa = 3.83VDD63 pKa = 3.41

Molecular weight: 7.1 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Q6C685|A0A4Q6C685_9GAMM Fused isobutyryl-CoA mutase OS=Xanthomonadaceae bacterium OX=1926873 GN=icmF PE=3 SV=1
MM1 pKa = 7.91LDD3 pKa = 3.7RR4 pKa = 11.84VRR6 pKa = 11.84DD7 pKa = 3.88CCRR10 pKa = 11.84VRR12 pKa = 11.84HH13 pKa = 5.04YY14 pKa = 10.96SLRR17 pKa = 11.84TEE19 pKa = 3.94RR20 pKa = 11.84AYY22 pKa = 11.33VDD24 pKa = 3.71WIRR27 pKa = 11.84RR28 pKa = 11.84FVVANDD34 pKa = 3.09KK35 pKa = 10.53RR36 pKa = 11.84HH37 pKa = 5.77PRR39 pKa = 11.84TMGAPEE45 pKa = 3.97VEE47 pKa = 4.55AFLSTLATTHH57 pKa = 7.0DD58 pKa = 4.12VAASTQNQALSALLFLYY75 pKa = 10.6RR76 pKa = 11.84EE77 pKa = 4.25VLGMQLPWMEE87 pKa = 4.0SVVRR91 pKa = 11.84AKK93 pKa = 10.44RR94 pKa = 11.84PQKK97 pKa = 10.32IPAVLSRR104 pKa = 11.84DD105 pKa = 3.35EE106 pKa = 4.22VGRR109 pKa = 11.84LLALMDD115 pKa = 3.85GVRR118 pKa = 11.84NGKK121 pKa = 9.27GGKK124 pKa = 8.65DD125 pKa = 2.79RR126 pKa = 11.84RR127 pKa = 11.84VPLPRR132 pKa = 11.84RR133 pKa = 11.84LRR135 pKa = 11.84EE136 pKa = 3.74RR137 pKa = 11.84LLEE140 pKa = 3.8QVEE143 pKa = 4.43RR144 pKa = 11.84VRR146 pKa = 11.84VQHH149 pKa = 6.38GRR151 pKa = 11.84DD152 pKa = 3.23LAGGAGEE159 pKa = 4.46VYY161 pKa = 10.39LPHH164 pKa = 7.06ALARR168 pKa = 11.84KK169 pKa = 8.69YY170 pKa = 10.56PNAGRR175 pKa = 11.84QFCWQYY181 pKa = 10.63VFPSPRR187 pKa = 11.84EE188 pKa = 3.84SRR190 pKa = 11.84DD191 pKa = 3.31PRR193 pKa = 11.84SGRR196 pKa = 11.84VRR198 pKa = 11.84RR199 pKa = 11.84HH200 pKa = 6.21HH201 pKa = 6.72IDD203 pKa = 3.06EE204 pKa = 4.85GVLQRR209 pKa = 11.84AVKK212 pKa = 9.77VARR215 pKa = 11.84DD216 pKa = 3.11RR217 pKa = 11.84AGIDD221 pKa = 3.43KK222 pKa = 9.86PASCHH227 pKa = 5.08TLRR230 pKa = 11.84HH231 pKa = 5.5SFATHH236 pKa = 6.51LLEE239 pKa = 4.74SGQDD243 pKa = 2.86IRR245 pKa = 11.84TVQEE249 pKa = 3.9LMGHH253 pKa = 6.42KK254 pKa = 10.07DD255 pKa = 3.11VSTTQIYY262 pKa = 7.47THH264 pKa = 5.38VLGRR268 pKa = 11.84GAHH271 pKa = 5.8GVLSPLDD278 pKa = 3.41QQ279 pKa = 4.9

Molecular weight: 31.81 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3169

0

3169

897507

19

1915

283.2

30.72

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.033 ± 0.066

0.834 ± 0.014

5.666 ± 0.032

5.422 ± 0.043

3.411 ± 0.03

8.808 ± 0.044

2.199 ± 0.023

4.034 ± 0.035

2.76 ± 0.036

10.988 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.181 ± 0.018

2.442 ± 0.03

5.467 ± 0.039

3.805 ± 0.029

7.673 ± 0.051

5.413 ± 0.032

4.588 ± 0.038

7.413 ± 0.034

1.544 ± 0.021

2.319 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski