Nocardioides albidus

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Propionibacteriales; Nocardioidaceae; Nocardioides

Average proteome isoelectric point is 5.92

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4085 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5C4WPK9|A0A5C4WPK9_9ACTN ABC transporter permease OS=Nocardioides albidus OX=1517589 GN=FHP29_00800 PE=3 SV=1
MM1 pKa = 7.51NLRR4 pKa = 11.84LADD7 pKa = 3.85AQNQPFASEE16 pKa = 4.25EE17 pKa = 4.15ACTSYY22 pKa = 10.91AAQGGVVQPYY32 pKa = 9.64KK33 pKa = 10.9AVVDD37 pKa = 3.93SDD39 pKa = 3.59GDD41 pKa = 4.13TVSDD45 pKa = 4.13ADD47 pKa = 4.11EE48 pKa = 4.13LAIGQRR54 pKa = 11.84ADD56 pKa = 3.08VYY58 pKa = 11.37NGVDD62 pKa = 3.79CRR64 pKa = 11.84TATPRR69 pKa = 11.84IAAGADD75 pKa = 3.19LSGCVLRR82 pKa = 11.84SAVLPTFFLWGTDD95 pKa = 3.74FEE97 pKa = 4.84NADD100 pKa = 3.91LTDD103 pKa = 4.38ADD105 pKa = 4.93LMGAQLDD112 pKa = 3.81QSNLSGANLSGADD125 pKa = 3.74LSFAYY130 pKa = 10.56VNNANLAGADD140 pKa = 3.44LTGAHH145 pKa = 7.14LAHH148 pKa = 6.67AQLASYY154 pKa = 10.51LVGADD159 pKa = 3.56FTSTDD164 pKa = 3.34RR165 pKa = 11.84SDD167 pKa = 4.0VLWITPFGSATCPDD181 pKa = 3.31GTEE184 pKa = 3.82AFLNEE189 pKa = 3.79GGTCEE194 pKa = 4.04GHH196 pKa = 7.36LFDD199 pKa = 6.06IPP201 pKa = 3.55

Molecular weight: 20.89 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5C4WCZ4|A0A5C4WCZ4_9ACTN Uncharacterized protein OS=Nocardioides albidus OX=1517589 GN=FHP29_03985 PE=4 SV=1
MM1 pKa = 7.61PSRR4 pKa = 11.84RR5 pKa = 11.84GRR7 pKa = 11.84SRR9 pKa = 11.84QPPSTSAHH17 pKa = 6.86RR18 pKa = 11.84ARR20 pKa = 11.84SHH22 pKa = 5.76PRR24 pKa = 11.84GGRR27 pKa = 11.84GPRR30 pKa = 11.84PAGRR34 pKa = 11.84RR35 pKa = 11.84PGRR38 pKa = 11.84GHH40 pKa = 7.22ARR42 pKa = 11.84PPHH45 pKa = 5.11PTARR49 pKa = 11.84RR50 pKa = 11.84PGPFRR55 pKa = 11.84ARR57 pKa = 11.84PPHH60 pKa = 7.03RR61 pKa = 11.84YY62 pKa = 9.22RR63 pKa = 11.84NAARR67 pKa = 11.84PPRR70 pKa = 11.84PCARR74 pKa = 11.84LQPSQGRR81 pKa = 11.84TATQPQPRR89 pKa = 11.84AARR92 pKa = 11.84AAPTRR97 pKa = 11.84PRR99 pKa = 11.84WRR101 pKa = 11.84RR102 pKa = 11.84TAAGPRR108 pKa = 11.84TPPPPRR114 pKa = 11.84SGRR117 pKa = 11.84AA118 pKa = 3.03

Molecular weight: 13.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4085

0

4085

1314685

33

3541

321.8

34.42

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.399 ± 0.047

0.741 ± 0.009

6.554 ± 0.032

5.829 ± 0.04

2.741 ± 0.021

9.287 ± 0.037

2.176 ± 0.019

3.625 ± 0.027

1.988 ± 0.031

10.218 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.785 ± 0.015

1.703 ± 0.02

5.708 ± 0.029

2.7 ± 0.018

7.745 ± 0.043

5.117 ± 0.024

5.935 ± 0.031

9.334 ± 0.034

1.478 ± 0.017

1.937 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski