Albugo candida

Taxonomy: cellular organisms; Eukaryota; Sar; Stramenopiles; Oomycota; Albuginales; Albuginaceae; Albugo

Average proteome isoelectric point is 6.9

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 13200 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A024GRH0|A0A024GRH0_9STRA Uncharacterized protein OS=Albugo candida OX=65357 GN=BN9_108320 PE=4 SV=1
MM1 pKa = 7.82RR2 pKa = 11.84LLASLQMISVALTVIGVTTTLQEE25 pKa = 4.3VQSSSSSLRR34 pKa = 11.84SLQSSDD40 pKa = 2.55HH41 pKa = 6.03SEE43 pKa = 3.94RR44 pKa = 11.84NNRR47 pKa = 11.84PTISMVVISEE57 pKa = 4.09YY58 pKa = 10.9FPIPPTEE65 pKa = 4.27EE66 pKa = 4.18ADD68 pKa = 3.47QSQNEE73 pKa = 4.35PKK75 pKa = 10.64VVIPDD80 pKa = 3.26DD81 pKa = 3.99TFNEE85 pKa = 4.55KK86 pKa = 10.86YY87 pKa = 10.77GIFDD91 pKa = 3.77GGDD94 pKa = 3.35DD95 pKa = 3.78EE96 pKa = 5.63EE97 pKa = 4.88EE98 pKa = 4.1EE99 pKa = 4.43EE100 pKa = 4.36EE101 pKa = 4.47EE102 pKa = 4.36KK103 pKa = 11.22VHH105 pKa = 6.33TGYY108 pKa = 10.78EE109 pKa = 4.26LEE111 pKa = 4.47CEE113 pKa = 4.2GLEE116 pKa = 4.08KK117 pKa = 10.9DD118 pKa = 3.51SAEE121 pKa = 4.19SVNEE125 pKa = 3.62ISSDD129 pKa = 3.82YY130 pKa = 11.44LLDD133 pKa = 4.14CQDD136 pKa = 4.29DD137 pKa = 4.12EE138 pKa = 6.15KK139 pKa = 11.82VDD141 pKa = 4.58LDD143 pKa = 4.09TKK145 pKa = 10.87KK146 pKa = 8.7HH147 pKa = 4.97TKK149 pKa = 7.31EE150 pKa = 3.62TGYY153 pKa = 10.83GQTFFDD159 pKa = 5.58CDD161 pKa = 3.91DD162 pKa = 4.15EE163 pKa = 6.76GDD165 pKa = 3.92NVDD168 pKa = 5.03EE169 pKa = 4.31VVQDD173 pKa = 3.58KK174 pKa = 11.21EE175 pKa = 4.38EE176 pKa = 4.06NTEE179 pKa = 3.73EE180 pKa = 3.91MRR182 pKa = 11.84YY183 pKa = 9.41EE184 pKa = 4.07LQPLLDD190 pKa = 5.34CDD192 pKa = 6.17DD193 pKa = 4.15EE194 pKa = 7.03DD195 pKa = 4.61EE196 pKa = 6.04DD197 pKa = 5.3INEE200 pKa = 3.84VDD202 pKa = 3.51QDD204 pKa = 3.73KK205 pKa = 11.5EE206 pKa = 4.3EE207 pKa = 4.14NTEE210 pKa = 3.79ATRR213 pKa = 11.84YY214 pKa = 9.21NPQPILICDD223 pKa = 3.55EE224 pKa = 5.57DD225 pKa = 4.2EE226 pKa = 6.64DD227 pKa = 4.92EE228 pKa = 6.7DD229 pKa = 4.78IDD231 pKa = 4.09HH232 pKa = 7.24KK233 pKa = 11.14SNSMVLKK240 pKa = 10.59EE241 pKa = 4.04EE242 pKa = 4.17AKK244 pKa = 10.55SLQEE248 pKa = 4.46SKK250 pKa = 10.88RR251 pKa = 11.84EE252 pKa = 4.06EE253 pKa = 3.9NWSEE257 pKa = 3.45ILQYY261 pKa = 11.59DD262 pKa = 4.03SMQAYY267 pKa = 10.12LDD269 pKa = 3.79KK270 pKa = 10.79EE271 pKa = 4.33AEE273 pKa = 4.02KK274 pKa = 10.9SRR276 pKa = 11.84EE277 pKa = 3.91SEE279 pKa = 3.29FDD281 pKa = 3.71YY282 pKa = 11.55NFGRR286 pKa = 11.84SNDD289 pKa = 3.48NEE291 pKa = 3.83FRR293 pKa = 11.84SCKK296 pKa = 9.93SLCAYY301 pKa = 7.86DD302 pKa = 3.83TTGPACGSDD311 pKa = 2.86GQTYY315 pKa = 10.86SNEE318 pKa = 3.61CMMRR322 pKa = 11.84CLEE325 pKa = 4.27PDD327 pKa = 2.52IKK329 pKa = 10.78YY330 pKa = 10.17YY331 pKa = 10.83HH332 pKa = 7.06EE333 pKa = 5.57GYY335 pKa = 10.43CLQQEE340 pKa = 4.46DD341 pKa = 4.47SSCDD345 pKa = 3.2VDD347 pKa = 4.87CSHH350 pKa = 6.65THH352 pKa = 7.18DD353 pKa = 4.76LVCGIDD359 pKa = 3.2GQTYY363 pKa = 10.5INYY366 pKa = 9.58CLYY369 pKa = 11.02AVTYY373 pKa = 9.84CDD375 pKa = 4.6KK376 pKa = 11.2NLATLPFLFGACEE389 pKa = 4.06SDD391 pKa = 3.56KK392 pKa = 10.71VTAFF396 pKa = 3.46

Molecular weight: 45.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A024GJV7|A0A024GJV7_9STRA Uncharacterized protein OS=Albugo candida OX=65357 GN=BN9_079480 PE=3 SV=1
MM1 pKa = 7.43IGHH4 pKa = 7.22RR5 pKa = 11.84DD6 pKa = 3.47SLRR9 pKa = 11.84DD10 pKa = 3.31AVIAKK15 pKa = 9.81KK16 pKa = 10.84VEE18 pKa = 4.21TVGIRR23 pKa = 11.84GDD25 pKa = 3.34VCNTSRR31 pKa = 11.84RR32 pKa = 11.84EE33 pKa = 3.76WRR35 pKa = 11.84TVTNLKK41 pKa = 10.17VSIMSKK47 pKa = 10.32SFAHH51 pKa = 6.62IDD53 pKa = 3.25AEE55 pKa = 4.16NRR57 pKa = 11.84QGALIIACEE66 pKa = 4.12PSTSFSGPYY75 pKa = 8.3QVCRR79 pKa = 11.84LSSTSEE85 pKa = 3.87STLVRR90 pKa = 11.84SVFLVVFKK98 pKa = 10.85KK99 pKa = 10.81AIGRR103 pKa = 11.84CEE105 pKa = 3.87EE106 pKa = 3.85HH107 pKa = 6.43CTRR110 pKa = 11.84GVFVLRR116 pKa = 11.84IRR118 pKa = 11.84YY119 pKa = 8.38HH120 pKa = 7.88VGIEE124 pKa = 3.96CCRR127 pKa = 11.84NGVRR131 pKa = 11.84TFVRR135 pKa = 11.84LIGLRR140 pKa = 11.84RR141 pKa = 11.84RR142 pKa = 11.84RR143 pKa = 3.54

Molecular weight: 16.2 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

13200

0

13200

6569959

49

14607

497.7

56.31

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.788 ± 0.015

2.073 ± 0.01

5.405 ± 0.013

6.622 ± 0.021

4.079 ± 0.013

4.813 ± 0.017

2.847 ± 0.01

5.97 ± 0.015

5.802 ± 0.023

9.68 ± 0.02

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.438 ± 0.007

4.321 ± 0.011

3.953 ± 0.015

4.651 ± 0.014

6.018 ± 0.017

8.817 ± 0.023

5.688 ± 0.013

5.968 ± 0.014

1.146 ± 0.006

2.923 ± 0.009
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski