Tropilaelaps mercedesae

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Panarthropoda; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Mesostigmata; Monogynaspida; Gamasina; Dermanyssoidea; Laelapidae; Tropilaelaps

Average proteome isoelectric point is 7.06

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 14292 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1V9XYY5|A0A1V9XYY5_9ACAR Methenyltetrahydrofolate cyclohydrolase OS=Tropilaelaps mercedesae OX=418985 GN=BIW11_00262 PE=3 SV=1
MM1 pKa = 7.46SRR3 pKa = 11.84QEE5 pKa = 4.46DD6 pKa = 3.65SDD8 pKa = 4.47DD9 pKa = 3.49GVMPVALSDD18 pKa = 4.02SDD20 pKa = 3.98WEE22 pKa = 4.05RR23 pKa = 11.84LSYY26 pKa = 11.2DD27 pKa = 4.2EE28 pKa = 6.11DD29 pKa = 3.86SQPPSLDD36 pKa = 3.43PDD38 pKa = 3.98LEE40 pKa = 4.91AGPGEE45 pKa = 4.25YY46 pKa = 9.88EE47 pKa = 4.24EE48 pKa = 5.5EE49 pKa = 5.13DD50 pKa = 3.18IAPCEE55 pKa = 3.98EE56 pKa = 5.32DD57 pKa = 3.43PLEE60 pKa = 5.51DD61 pKa = 3.36EE62 pKa = 5.39GEE64 pKa = 4.27PANLTAPFDD73 pKa = 4.53LDD75 pKa = 4.31DD76 pKa = 4.93DD77 pKa = 4.73ASEE80 pKa = 4.29NVISTEE86 pKa = 3.93PCDD89 pKa = 3.93SGILVEE95 pKa = 4.5RR96 pKa = 11.84AGARR100 pKa = 11.84QSSVPFCSSPSQRR113 pKa = 11.84TGGTGLLLVLICVIQDD129 pKa = 3.48FLQPRR134 pKa = 11.84IQWLFDD140 pKa = 3.02SALYY144 pKa = 10.01RR145 pKa = 11.84KK146 pKa = 9.59YY147 pKa = 10.8LADD150 pKa = 3.49NAMLSSYY157 pKa = 10.64LVTATVVMCLPLAMALLVSALLVACSAAACVLLVAMLVAVGVVLSLVWAFWVFVPVTILLGALFLGSTIYY227 pKa = 10.79QKK229 pKa = 8.5TFRR232 pKa = 11.84IKK234 pKa = 10.72LSAKK238 pKa = 9.43EE239 pKa = 3.97VV240 pKa = 3.41

Molecular weight: 25.96 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1V9WY40|A0A1V9WY40_9ACAR Endophilin-A-like OS=Tropilaelaps mercedesae OX=418985 GN=BIW11_05037 PE=4 SV=1
MM1 pKa = 6.94SQRR4 pKa = 11.84VSQRR8 pKa = 11.84VSQRR12 pKa = 11.84VSQRR16 pKa = 11.84VSQKK20 pKa = 9.56VLQRR24 pKa = 11.84VPRR27 pKa = 11.84RR28 pKa = 11.84LSQRR32 pKa = 11.84VPQRR36 pKa = 11.84VLQRR40 pKa = 11.84VPQRR44 pKa = 11.84VSHH47 pKa = 6.42RR48 pKa = 11.84VLQRR52 pKa = 11.84VSHH55 pKa = 6.31RR56 pKa = 11.84VLQRR60 pKa = 11.84VPRR63 pKa = 11.84RR64 pKa = 11.84LSQRR68 pKa = 11.84VSQRR72 pKa = 11.84VPRR75 pKa = 11.84RR76 pKa = 11.84WSS78 pKa = 3.01

Molecular weight: 9.52 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

14272

20

14292

5410289

8

10260

378.6

42.07

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.77 ± 0.022

2.054 ± 0.019

5.272 ± 0.016

6.111 ± 0.027

3.646 ± 0.015

6.469 ± 0.025

2.676 ± 0.012

4.606 ± 0.017

5.131 ± 0.026

9.248 ± 0.029

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.266 ± 0.009

3.954 ± 0.013

5.551 ± 0.027

4.453 ± 0.021

6.434 ± 0.021

8.236 ± 0.028

5.727 ± 0.018

6.648 ± 0.02

1.048 ± 0.007

2.685 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski