Amino acid dipepetide frequency for Human picobirnavirus (strain Human/Thailand/Hy005102/-) (PBV)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
5.348AlaAla: 5.348 ± 2.086
0.0AlaCys: 0.0 ± 0.0
3.82AlaAsp: 3.82 ± 0.171
2.292AlaGlu: 2.292 ± 0.563
3.056AlaPhe: 3.056 ± 1.815
5.348AlaGly: 5.348 ± 1.037
0.764AlaHis: 0.764 ± 0.529
6.112AlaIle: 6.112 ± 1.277
2.292AlaLys: 2.292 ± 0.793
4.584AlaLeu: 4.584 ± 1.127
2.292AlaMet: 2.292 ± 0.758
5.348AlaAsn: 5.348 ± 3.565
3.82AlaPro: 3.82 ± 1.758
6.112AlaGln: 6.112 ± 3.327
4.584AlaArg: 4.584 ± 2.722
5.348AlaSer: 5.348 ± 4.508
4.584AlaThr: 4.584 ± 2.459
8.403AlaVal: 8.403 ± 1.58
2.292AlaTrp: 2.292 ± 0.758
3.82AlaTyr: 3.82 ± 0.171
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
1.528CysAsp: 1.528 ± 1.092
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
0.0CysGly: 0.0 ± 0.0
0.0CysHis: 0.0 ± 0.0
0.764CysIle: 0.764 ± 0.546
0.0CysLys: 0.0 ± 0.0
0.764CysLeu: 0.764 ± 0.546
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
0.0CysPro: 0.0 ± 0.0
0.764CysGln: 0.764 ± 0.546
0.0CysArg: 0.0 ± 0.0
0.764CysSer: 0.764 ± 0.529
1.528CysThr: 1.528 ± 1.092
3.056CysVal: 3.056 ± 0.791
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
0.0AspAla: 0.0 ± 0.0
0.764AspCys: 0.764 ± 0.546
1.528AspAsp: 1.528 ± 1.092
3.056AspGlu: 3.056 ± 0.639
3.82AspPhe: 3.82 ± 1.128
4.584AspGly: 4.584 ± 1.586
0.764AspHis: 0.764 ± 0.529
0.764AspIle: 0.764 ± 0.546
1.528AspLys: 1.528 ± 0.395
4.584AspLeu: 4.584 ± 0.542
1.528AspMet: 1.528 ± 1.092
1.528AspAsn: 1.528 ± 0.395
2.292AspPro: 2.292 ± 0.758
3.056AspGln: 3.056 ± 0.791
2.292AspArg: 2.292 ± 1.791
3.056AspSer: 3.056 ± 0.791
5.348AspThr: 5.348 ± 1.45
8.403AspVal: 8.403 ± 2.209
2.292AspTrp: 2.292 ± 0.758
1.528AspTyr: 1.528 ± 0.395
0.0AspXaa: 0.0 ± 0.0
Glu
6.112GluAla: 6.112 ± 0.702
0.0GluCys: 0.0 ± 0.0
3.056GluAsp: 3.056 ± 0.791
3.056GluGlu: 3.056 ± 0.601
1.528GluPhe: 1.528 ± 1.092
0.764GluGly: 0.764 ± 0.546
0.764GluHis: 0.764 ± 0.958
1.528GluIle: 1.528 ± 0.913
2.292GluLys: 2.292 ± 1.16
6.112GluLeu: 6.112 ± 3.043
2.292GluMet: 2.292 ± 1.789
3.82GluAsn: 3.82 ± 0.171
0.0GluPro: 0.0 ± 0.0
1.528GluGln: 1.528 ± 0.907
3.82GluArg: 3.82 ± 1.046
5.348GluSer: 5.348 ± 2.301
6.875GluThr: 6.875 ± 5.18
3.82GluVal: 3.82 ± 1.087
3.82GluTrp: 3.82 ± 1.046
0.764GluTyr: 0.764 ± 0.529
0.0GluXaa: 0.0 ± 0.0
Phe
4.584PheAla: 4.584 ± 1.459
0.764PheCys: 0.764 ± 0.546
3.82PheAsp: 3.82 ± 1.128
0.764PheGlu: 0.764 ± 0.546
0.764PhePhe: 0.764 ± 0.529
4.584PheGly: 4.584 ± 2.459
1.528PheHis: 1.528 ± 1.058
0.0PheIle: 0.0 ± 0.0
1.528PheLys: 1.528 ± 1.058
2.292PheLeu: 2.292 ± 1.638
0.0PheMet: 0.0 ± 0.0
3.82PheAsn: 3.82 ± 1.087
3.056PhePro: 3.056 ± 0.791
2.292PheGln: 2.292 ± 0.758
0.764PheArg: 0.764 ± 0.529
3.056PheSer: 3.056 ± 1.567
0.764PheThr: 0.764 ± 0.529
0.764PheVal: 0.764 ± 0.529
0.0PheTrp: 0.0 ± 0.0
0.764PheTyr: 0.764 ± 0.546
0.0PheXaa: 0.0 ± 0.0
Gly
6.112GlyAla: 6.112 ± 2.085
0.0GlyCys: 0.0 ± 0.0
5.348GlyAsp: 5.348 ± 1.45
5.348GlyGlu: 5.348 ± 0.232
3.056GlyPhe: 3.056 ± 1.246
2.292GlyGly: 2.292 ± 1.16
0.764GlyHis: 0.764 ± 0.529
4.584GlyIle: 4.584 ± 1.586
0.764GlyLys: 0.764 ± 0.958
6.112GlyLeu: 6.112 ± 1.277
2.292GlyMet: 2.292 ± 1.638
0.0GlyAsn: 0.0 ± 0.0
3.056GlyPro: 3.056 ± 1.303
5.348GlyGln: 5.348 ± 1.074
3.056GlyArg: 3.056 ± 1.303
3.82GlySer: 3.82 ± 2.016
4.584GlyThr: 4.584 ± 2.278
3.82GlyVal: 3.82 ± 1.128
0.764GlyTrp: 0.764 ± 0.546
3.056GlyTyr: 3.056 ± 0.601
0.0GlyXaa: 0.0 ± 0.0
His
1.528HisAla: 1.528 ± 1.058
0.0HisCys: 0.0 ± 0.0
0.764HisAsp: 0.764 ± 0.529
2.292HisGlu: 2.292 ± 0.758
0.764HisPhe: 0.764 ± 0.546
1.528HisGly: 1.528 ± 1.092
1.528HisHis: 1.528 ± 1.092
1.528HisIle: 1.528 ± 0.907
0.764HisLys: 0.764 ± 0.958
0.764HisLeu: 0.764 ± 0.958
0.764HisMet: 0.764 ± 0.529
1.528HisAsn: 1.528 ± 1.916
1.528HisPro: 1.528 ± 0.395
0.0HisGln: 0.0 ± 0.0
0.764HisArg: 0.764 ± 0.546
2.292HisSer: 2.292 ± 1.588
2.292HisThr: 2.292 ± 0.793
0.0HisVal: 0.0 ± 0.0
0.0HisTrp: 0.0 ± 0.0
0.0HisTyr: 0.0 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
4.584IleAla: 4.584 ± 2.333
0.764IleCys: 0.764 ± 0.546
2.292IleAsp: 2.292 ± 1.638
2.292IleGlu: 2.292 ± 0.793
1.528IlePhe: 1.528 ± 1.058
1.528IleGly: 1.528 ± 0.907
2.292IleHis: 2.292 ± 0.758
3.82IleIle: 3.82 ± 0.982
2.292IleLys: 2.292 ± 1.16
6.112IleLeu: 6.112 ± 3.327
0.764IleMet: 0.764 ± 0.529
0.764IleAsn: 0.764 ± 0.529
3.82IlePro: 3.82 ± 1.834
0.764IleGln: 0.764 ± 0.529
2.292IleArg: 2.292 ± 1.16
6.112IleSer: 6.112 ± 1.277
1.528IleThr: 1.528 ± 0.395
0.0IleVal: 0.0 ± 0.0
0.0IleTrp: 0.0 ± 0.0
0.764IleTyr: 0.764 ± 0.529
0.0IleXaa: 0.0 ± 0.0
Lys
5.348LysAla: 5.348 ± 1.45
0.0LysCys: 0.0 ± 0.0
0.764LysAsp: 0.764 ± 0.546
3.82LysGlu: 3.82 ± 1.046
0.764LysPhe: 0.764 ± 0.546
3.056LysGly: 3.056 ± 2.184
0.764LysHis: 0.764 ± 0.958
0.764LysIle: 0.764 ± 0.529
3.82LysLys: 3.82 ± 1.128
4.584LysLeu: 4.584 ± 1.459
2.292LysMet: 2.292 ± 0.886
1.528LysAsn: 1.528 ± 0.907
2.292LysPro: 2.292 ± 0.758
3.056LysGln: 3.056 ± 1.303
2.292LysArg: 2.292 ± 0.563
3.82LysSer: 3.82 ± 2.04
4.584LysThr: 4.584 ± 1.127
0.764LysVal: 0.764 ± 0.546
0.0LysTrp: 0.0 ± 0.0
5.348LysTyr: 5.348 ± 1.45
0.0LysXaa: 0.0 ± 0.0
Leu
9.167LeuAla: 9.167 ± 1.802
0.0LeuCys: 0.0 ± 0.0
3.82LeuAsp: 3.82 ± 2.016
6.875LeuGlu: 6.875 ± 1.69
0.764LeuPhe: 0.764 ± 0.529
9.167LeuGly: 9.167 ± 2.084
0.0LeuHis: 0.0 ± 0.0
1.528LeuIle: 1.528 ± 0.395
3.056LeuLys: 3.056 ± 1.567
6.112LeuLeu: 6.112 ± 1.201
2.292LeuMet: 2.292 ± 0.758
3.82LeuAsn: 3.82 ± 0.982
3.82LeuPro: 3.82 ± 1.758
4.584LeuGln: 4.584 ± 2.74
5.348LeuArg: 5.348 ± 3.822
2.292LeuSer: 2.292 ± 0.563
7.639LeuThr: 7.639 ± 0.994
7.639LeuVal: 7.639 ± 1.641
0.764LeuTrp: 0.764 ± 0.529
3.82LeuTyr: 3.82 ± 2.646
0.0LeuXaa: 0.0 ± 0.0
Met
0.764MetAla: 0.764 ± 0.958
2.292MetCys: 2.292 ± 0.758
1.528MetAsp: 1.528 ± 0.395
2.292MetGlu: 2.292 ± 1.16
4.584MetPhe: 4.584 ± 0.459
1.528MetGly: 1.528 ± 0.395
0.764MetHis: 0.764 ± 0.529
2.292MetIle: 2.292 ± 1.588
1.528MetLys: 1.528 ± 0.395
2.292MetLeu: 2.292 ± 0.758
2.292MetMet: 2.292 ± 0.758
1.528MetAsn: 1.528 ± 0.395
1.528MetPro: 1.528 ± 0.395
3.82MetGln: 3.82 ± 2.016
1.528MetArg: 1.528 ± 1.092
3.82MetSer: 3.82 ± 1.128
2.292MetThr: 2.292 ± 1.135
1.528MetVal: 1.528 ± 0.395
0.0MetTrp: 0.0 ± 0.0
0.764MetTyr: 0.764 ± 0.529
0.0MetXaa: 0.0 ± 0.0
Asn
4.584AsnAla: 4.584 ± 2.34
0.0AsnCys: 0.0 ± 0.0
3.056AsnAsp: 3.056 ± 2.117
1.528AsnGlu: 1.528 ± 1.916
0.764AsnPhe: 0.764 ± 0.529
3.056AsnGly: 3.056 ± 1.246
0.0AsnHis: 0.0 ± 0.0
6.112AsnIle: 6.112 ± 0.733
2.292AsnLys: 2.292 ± 1.588
6.112AsnLeu: 6.112 ± 2.389
1.528AsnMet: 1.528 ± 1.058
3.056AsnAsn: 3.056 ± 2.117
3.056AsnPro: 3.056 ± 1.303
1.528AsnGln: 1.528 ± 0.907
3.056AsnArg: 3.056 ± 1.815
4.584AsnSer: 4.584 ± 0.459
1.528AsnThr: 1.528 ± 0.913
3.82AsnVal: 3.82 ± 1.046
1.528AsnTrp: 1.528 ± 1.092
1.528AsnTyr: 1.528 ± 1.058
0.0AsnXaa: 0.0 ± 0.0
Pro
2.292ProAla: 2.292 ± 0.758
0.764ProCys: 0.764 ± 0.546
2.292ProAsp: 2.292 ± 0.793
1.528ProGlu: 1.528 ± 0.395
3.82ProPhe: 3.82 ± 1.128
5.348ProGly: 5.348 ± 1.45
1.528ProHis: 1.528 ± 1.058
3.056ProIle: 3.056 ± 1.246
1.528ProLys: 1.528 ± 0.395
4.584ProLeu: 4.584 ± 1.586
0.764ProMet: 0.764 ± 0.546
3.82ProAsn: 3.82 ± 1.128
0.0ProPro: 0.0 ± 0.0
1.528ProGln: 1.528 ± 1.058
2.292ProArg: 2.292 ± 0.758
0.764ProSer: 0.764 ± 0.529
4.584ProThr: 4.584 ± 1.186
1.528ProVal: 1.528 ± 1.058
0.0ProTrp: 0.0 ± 0.0
0.764ProTyr: 0.764 ± 0.546
0.0ProXaa: 0.0 ± 0.0
Gln
2.292GlnAla: 2.292 ± 0.758
0.764GlnCys: 0.764 ± 0.546
3.056GlnAsp: 3.056 ± 0.601
6.112GlnGlu: 6.112 ± 0.733
0.764GlnPhe: 0.764 ± 0.529
0.0GlnGly: 0.0 ± 0.0
2.292GlnHis: 2.292 ± 1.16
3.056GlnIle: 3.056 ± 1.521
1.528GlnLys: 1.528 ± 0.913
3.056GlnLeu: 3.056 ± 1.815
0.764GlnMet: 0.764 ± 0.529
3.056GlnAsn: 3.056 ± 1.246
1.528GlnPro: 1.528 ± 1.092
0.0GlnGln: 0.0 ± 0.0
4.584GlnArg: 4.584 ± 2.34
1.528GlnSer: 1.528 ± 1.092
0.764GlnThr: 0.764 ± 0.958
4.584GlnVal: 4.584 ± 0.542
2.292GlnTrp: 2.292 ± 0.758
3.056GlnTyr: 3.056 ± 0.639
0.0GlnXaa: 0.0 ± 0.0
Arg
9.167ArgAla: 9.167 ± 2.974
0.0ArgCys: 0.0 ± 0.0
1.528ArgAsp: 1.528 ± 0.395
4.584ArgGlu: 4.584 ± 3.581
0.0ArgPhe: 0.0 ± 0.0
3.82ArgGly: 3.82 ± 2.479
3.82ArgHis: 3.82 ± 1.408
0.764ArgIle: 0.764 ± 0.546
3.82ArgLys: 3.82 ± 0.171
5.348ArgLeu: 5.348 ± 2.086
2.292ArgMet: 2.292 ± 0.71
2.292ArgAsn: 2.292 ± 0.758
0.0ArgPro: 0.0 ± 0.0
1.528ArgGln: 1.528 ± 0.395
5.348ArgArg: 5.348 ± 1.797
3.82ArgSer: 3.82 ± 3.669
0.764ArgThr: 0.764 ± 0.546
3.82ArgVal: 3.82 ± 2.04
0.764ArgTrp: 0.764 ± 0.546
3.82ArgTyr: 3.82 ± 1.834
0.0ArgXaa: 0.0 ± 0.0
Ser
6.875SerAla: 6.875 ± 2.884
0.0SerCys: 0.0 ± 0.0
0.764SerAsp: 0.764 ± 0.546
1.528SerGlu: 1.528 ± 1.092
2.292SerPhe: 2.292 ± 1.588
5.348SerGly: 5.348 ± 2.086
0.764SerHis: 0.764 ± 0.546
3.82SerIle: 3.82 ± 2.04
9.167SerLys: 9.167 ± 1.352
4.584SerLeu: 4.584 ± 1.127
3.82SerMet: 3.82 ± 2.04
6.112SerAsn: 6.112 ± 4.227
1.528SerPro: 1.528 ± 0.395
2.292SerGln: 2.292 ± 1.791
4.584SerArg: 4.584 ± 2.74
1.528SerSer: 1.528 ± 0.907
5.348SerThr: 5.348 ± 0.976
3.82SerVal: 3.82 ± 0.171
0.0SerTrp: 0.0 ± 0.0
3.82SerTyr: 3.82 ± 0.171
0.0SerXaa: 0.0 ± 0.0
Thr
3.056ThrAla: 3.056 ± 3.833
0.764ThrCys: 0.764 ± 0.546
2.292ThrAsp: 2.292 ± 1.638
4.584ThrGlu: 4.584 ± 3.579
1.528ThrPhe: 1.528 ± 0.395
4.584ThrGly: 4.584 ± 2.278
0.0ThrHis: 0.0 ± 0.0
3.056ThrIle: 3.056 ± 1.246
5.348ThrLys: 5.348 ± 1.492
5.348ThrLeu: 5.348 ± 1.492
5.348ThrMet: 5.348 ± 1.963
3.056ThrAsn: 3.056 ± 0.639
3.82ThrPro: 3.82 ± 1.758
3.82ThrGln: 3.82 ± 1.408
5.348ThrArg: 5.348 ± 1.732
3.82ThrSer: 3.82 ± 1.975
3.056ThrThr: 3.056 ± 1.246
0.764ThrVal: 0.764 ± 0.546
0.0ThrTrp: 0.0 ± 0.0
5.348ThrTyr: 5.348 ± 0.976
0.0ThrXaa: 0.0 ± 0.0
Val
6.112ValAla: 6.112 ± 1.832
1.528ValCys: 1.528 ± 0.395
6.875ValAsp: 6.875 ± 2.274
0.764ValGlu: 0.764 ± 0.958
2.292ValPhe: 2.292 ± 0.758
4.584ValGly: 4.584 ± 1.127
0.764ValHis: 0.764 ± 0.546
0.0ValIle: 0.0 ± 0.0
3.056ValLys: 3.056 ± 0.791
4.584ValLeu: 4.584 ± 0.542
3.82ValMet: 3.82 ± 1.834
6.112ValAsn: 6.112 ± 1.502
4.584ValPro: 4.584 ± 1.516
0.764ValGln: 0.764 ± 0.546
1.528ValArg: 1.528 ± 1.058
6.112ValSer: 6.112 ± 2.594
3.056ValThr: 3.056 ± 0.601
6.112ValVal: 6.112 ± 2.594
2.292ValTrp: 2.292 ± 1.638
3.82ValTyr: 3.82 ± 1.834
0.0ValXaa: 0.0 ± 0.0
Trp
0.764TrpAla: 0.764 ± 0.529
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
1.528TrpGlu: 1.528 ± 0.907
0.0TrpPhe: 0.0 ± 0.0
1.528TrpGly: 1.528 ± 1.092
0.764TrpHis: 0.764 ± 0.546
0.0TrpIle: 0.0 ± 0.0
1.528TrpLys: 1.528 ± 0.395
0.764TrpLeu: 0.764 ± 0.546
1.528TrpMet: 1.528 ± 0.395
0.0TrpAsn: 0.0 ± 0.0
0.764TrpPro: 0.764 ± 0.546
0.764TrpGln: 0.764 ± 0.529
0.764TrpArg: 0.764 ± 0.546
2.292TrpSer: 2.292 ± 0.793
0.764TrpThr: 0.764 ± 0.529
1.528TrpVal: 1.528 ± 1.092
0.764TrpTrp: 0.764 ± 0.546
1.528TrpTyr: 1.528 ± 0.395
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.528TyrAla: 1.528 ± 0.395
0.764TyrCys: 0.764 ± 0.546
4.584TyrAsp: 4.584 ± 1.186
3.056TyrGlu: 3.056 ± 1.521
3.82TyrPhe: 3.82 ± 1.128
1.528TyrGly: 1.528 ± 0.395
0.764TyrHis: 0.764 ± 0.546
0.764TyrIle: 0.764 ± 0.529
1.528TyrLys: 1.528 ± 1.092
3.82TyrLeu: 3.82 ± 1.087
1.528TyrMet: 1.528 ± 0.395
1.528TyrAsn: 1.528 ± 0.395
2.292TyrPro: 2.292 ± 0.758
1.528TyrGln: 1.528 ± 0.913
3.056TyrArg: 3.056 ± 0.639
4.584TyrSer: 4.584 ± 1.127
3.056TyrThr: 3.056 ± 1.246
4.584TyrVal: 4.584 ± 2.278
0.0TyrTrp: 0.0 ± 0.0
3.056TyrTyr: 3.056 ± 0.791
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 3 proteins (1310 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski