European turkey coronavirus 080385d

Taxonomy: Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Gammacoronavirus; Igacovirus; Avian coronavirus

Average proteome isoelectric point is 7.29

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 13 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0S2ZXR0|A0A0S2ZXR0_9GAMC Growth factor-like peptide (Fragment) OS=European turkey coronavirus 080385d OX=1763410 PE=3 SV=1
MM1 pKa = 7.88LDD3 pKa = 3.68FEE5 pKa = 5.94AIIEE9 pKa = 4.19TGYY12 pKa = 11.47GVIQQISFDD21 pKa = 3.92LQHH24 pKa = 6.75ISSVLNTEE32 pKa = 4.09LFDD35 pKa = 4.14PFEE38 pKa = 4.4FCVYY42 pKa = 10.39RR43 pKa = 11.84GGNYY47 pKa = 8.75WEE49 pKa = 5.19LEE51 pKa = 4.23SADD54 pKa = 4.2EE55 pKa = 4.75FSGDD59 pKa = 4.17DD60 pKa = 3.71EE61 pKa = 4.51FVEE64 pKa = 4.53

Molecular weight: 7.41 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0S2ZXV4|A0A0S2ZXV4_9GAMC 4b OS=European turkey coronavirus 080385d OX=1763410 PE=4 SV=1
MM1 pKa = 7.47KK2 pKa = 9.77WLTSFGRR9 pKa = 11.84AVISCYY15 pKa = 10.12KK16 pKa = 10.68ALLLTQLRR24 pKa = 11.84VLDD27 pKa = 4.68RR28 pKa = 11.84LILDD32 pKa = 4.43HH33 pKa = 6.7GPKK36 pKa = 8.96RR37 pKa = 11.84TLTCARR43 pKa = 11.84RR44 pKa = 11.84VLLVQLDD51 pKa = 3.83LVYY54 pKa = 10.88RR55 pKa = 11.84LAYY58 pKa = 9.49TPTQSLVV65 pKa = 3.06

Molecular weight: 7.5 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

13

0

13

9014

56

3950

693.4

77.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.534 ± 0.543

3.361 ± 0.23

5.447 ± 0.49

4.626 ± 0.476

5.458 ± 0.342

6.246 ± 0.395

1.764 ± 0.274

5.381 ± 0.417

6.091 ± 0.767

8.809 ± 0.545

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.742 ± 0.231

5.591 ± 0.815

3.772 ± 0.409

3.528 ± 0.418

3.55 ± 0.628

6.767 ± 0.674

5.957 ± 0.478

9.164 ± 0.79

1.331 ± 0.187

4.87 ± 0.443
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski