Beijerinckia sp. 28-YEA-48

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Beijerinckiaceae; Beijerinckia; unclassified Beijerinckia

Average proteome isoelectric point is 6.86

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5975 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1H4KSZ1|A0A1H4KSZ1_9RHIZ Uncharacterized protein OS=Beijerinckia sp. 28-YEA-48 OX=1882748 GN=SAMN05443249_0675 PE=4 SV=1
MM1 pKa = 7.47KK2 pKa = 10.34VFAPAAMSLLLSAVQPASAQWAPEE26 pKa = 3.82QGDD29 pKa = 4.17GFSAGYY35 pKa = 9.26FWALRR40 pKa = 11.84NHH42 pKa = 4.46VTEE45 pKa = 5.71GYY47 pKa = 10.12RR48 pKa = 11.84CDD50 pKa = 3.85SFDD53 pKa = 3.4DD54 pKa = 3.89AFRR57 pKa = 11.84AGCNAYY63 pKa = 7.56TQNFTSEE70 pKa = 4.65DD71 pKa = 3.96DD72 pKa = 3.82EE73 pKa = 7.72DD74 pKa = 6.39DD75 pKa = 6.17DD76 pKa = 6.22GDD78 pKa = 3.73EE79 pKa = 4.57DD80 pKa = 4.1

Molecular weight: 8.79 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1H4U120|A0A1H4U120_9RHIZ Maleylacetoacetate isomerase OS=Beijerinckia sp. 28-YEA-48 OX=1882748 GN=SAMN05443249_3136 PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.09QPSKK9 pKa = 8.8IVRR12 pKa = 11.84KK13 pKa = 9.24RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.55GFRR19 pKa = 11.84ARR21 pKa = 11.84MATVGGRR28 pKa = 11.84RR29 pKa = 11.84VLAARR34 pKa = 11.84RR35 pKa = 11.84AQGRR39 pKa = 11.84KK40 pKa = 9.3KK41 pKa = 10.65LSAA44 pKa = 3.91

Molecular weight: 5.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5975

0

5975

1913401

29

5085

320.2

34.74

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.273 ± 0.039

0.837 ± 0.01

5.433 ± 0.024

5.086 ± 0.034

3.892 ± 0.02

8.477 ± 0.051

2.026 ± 0.019

5.574 ± 0.024

3.514 ± 0.028

9.924 ± 0.037

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.524 ± 0.017

2.88 ± 0.034

5.27 ± 0.028

3.354 ± 0.02

6.749 ± 0.032

5.636 ± 0.036

5.522 ± 0.038

7.373 ± 0.027

1.337 ± 0.012

2.317 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski