Plicaturopsis crispa FD-325 SS-3

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Amylocorticiales; Amylocorticiaceae; Plicaturopsis; Plicaturopsis crispa

Average proteome isoelectric point is 6.97

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2710 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0C9SRR0|A0A0C9SRR0_PLICR Unplaced genomic scaffold PLICRscaffold_16 whole genome shotgun sequence OS=Plicaturopsis crispa FD-325 SS-3 OX=944288 GN=PLICRDRAFT_348688 PE=4 SV=1
MM1 pKa = 8.14DD2 pKa = 4.87EE3 pKa = 6.4DD4 pKa = 4.25EE5 pKa = 6.18DD6 pKa = 4.6EE7 pKa = 6.13DD8 pKa = 4.87NIPDD12 pKa = 3.81NYY14 pKa = 10.49EE15 pKa = 4.12DD16 pKa = 5.06NIPDD20 pKa = 3.65NYY22 pKa = 10.25EE23 pKa = 3.52DD24 pKa = 5.42HH25 pKa = 7.23IPDD28 pKa = 3.3NYY30 pKa = 10.72EE31 pKa = 3.59FYY33 pKa = 10.79LANDD37 pKa = 3.35EE38 pKa = 4.95HH39 pKa = 7.51DD40 pKa = 4.11IPDD43 pKa = 4.2LLRR46 pKa = 11.84FSRR49 pKa = 11.84PRR51 pKa = 11.84EE52 pKa = 3.7RR53 pKa = 11.84LPSIFGDD60 pKa = 3.65VCFTPLPSTLDD71 pKa = 3.58LQPQPSHH78 pKa = 6.26PHH80 pKa = 6.12PPGCEE85 pKa = 3.61WGRR88 pKa = 11.84GDD90 pKa = 4.36

Molecular weight: 10.51 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0C9SVY9|A0A0C9SVY9_PLICR Unplaced genomic scaffold PLICRscaffold_25 whole genome shotgun sequence OS=Plicaturopsis crispa FD-325 SS-3 OX=944288 GN=PLICRDRAFT_47231 PE=3 SV=1
MM1 pKa = 7.49FFFLFQPPGARR12 pKa = 11.84RR13 pKa = 11.84RR14 pKa = 11.84SRR16 pKa = 11.84PRR18 pKa = 11.84AQSRR22 pKa = 11.84AAPPRR27 pKa = 11.84TPPPPRR33 pKa = 11.84YY34 pKa = 8.71PPQSPPPPPSLSPVPASATSRR55 pKa = 11.84RR56 pKa = 11.84IATTTPSALPTRR68 pKa = 11.84SPPRR72 pKa = 11.84TPPSSPTRR80 pKa = 11.84PSSSSPPTPPP90 pKa = 3.68

Molecular weight: 9.62 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2709

1

2710

993639

49

3923

366.7

40.44

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.758 ± 0.052

1.437 ± 0.026

5.701 ± 0.043

5.541 ± 0.05

3.496 ± 0.036

6.48 ± 0.048

2.842 ± 0.027

4.391 ± 0.037

4.043 ± 0.044

8.85 ± 0.062

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.019 ± 0.017

3.059 ± 0.027

7.038 ± 0.071

3.425 ± 0.028

7.204 ± 0.055

8.27 ± 0.068

6.038 ± 0.035

6.311 ± 0.038

1.522 ± 0.019

2.573 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski