Amino acid dipepetide frequency for Rhizoctonia solani virus 717

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.541AlaAla: 3.541 ± 1.488
0.0AlaCys: 0.0 ± 0.0
4.249AlaAsp: 4.249 ± 0.094
1.416AlaGlu: 1.416 ± 0.031
4.958AlaPhe: 4.958 ± 0.36
2.125AlaGly: 2.125 ± 0.423
4.958AlaHis: 4.958 ± 1.519
4.958AlaIle: 4.958 ± 0.579
1.416AlaLys: 1.416 ± 0.971
3.541AlaLeu: 3.541 ± 0.392
0.0AlaMet: 0.0 ± 0.0
3.541AlaAsn: 3.541 ± 2.427
1.416AlaPro: 1.416 ± 0.971
3.541AlaGln: 3.541 ± 0.392
2.833AlaArg: 2.833 ± 1.002
6.374AlaSer: 6.374 ± 3.43
9.915AlaThr: 9.915 ± 2.098
1.416AlaVal: 1.416 ± 0.031
0.0AlaTrp: 0.0 ± 0.0
3.541AlaTyr: 3.541 ± 2.271
0.0AlaXaa: 0.0 ± 0.0
Cys
0.708CysAla: 0.708 ± 0.454
0.708CysCys: 0.708 ± 0.454
0.0CysAsp: 0.0 ± 0.0
0.708CysGlu: 0.708 ± 0.485
0.708CysPhe: 0.708 ± 0.485
0.0CysGly: 0.0 ± 0.0
1.416CysHis: 1.416 ± 0.908
0.708CysIle: 0.708 ± 0.454
0.708CysLys: 0.708 ± 0.454
0.708CysLeu: 0.708 ± 0.454
1.416CysMet: 1.416 ± 0.031
0.708CysAsn: 0.708 ± 0.454
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.708CysArg: 0.708 ± 0.454
0.708CysSer: 0.708 ± 0.485
0.708CysThr: 0.708 ± 0.454
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
5.666AspAla: 5.666 ± 2.004
0.0AspCys: 0.0 ± 0.0
4.249AspAsp: 4.249 ± 1.033
0.708AspGlu: 0.708 ± 0.454
4.249AspPhe: 4.249 ± 1.785
2.125AspGly: 2.125 ± 0.423
0.708AspHis: 0.708 ± 0.454
6.374AspIle: 6.374 ± 1.55
1.416AspLys: 1.416 ± 0.031
4.249AspLeu: 4.249 ± 1.785
2.125AspMet: 2.125 ± 0.423
4.249AspAsn: 4.249 ± 1.033
2.833AspPro: 2.833 ± 1.817
2.833AspGln: 2.833 ± 0.063
6.374AspArg: 6.374 ± 2.49
7.79AspSer: 7.79 ± 0.298
2.833AspThr: 2.833 ± 0.877
2.833AspVal: 2.833 ± 0.063
1.416AspTrp: 1.416 ± 0.031
4.249AspTyr: 4.249 ± 0.846
0.0AspXaa: 0.0 ± 0.0
Glu
1.416GluAla: 1.416 ± 0.908
1.416GluCys: 1.416 ± 0.908
1.416GluAsp: 1.416 ± 0.908
0.708GluGlu: 0.708 ± 0.454
4.249GluPhe: 4.249 ± 0.846
0.0GluGly: 0.0 ± 0.0
0.708GluHis: 0.708 ± 0.454
2.833GluIle: 2.833 ± 1.002
1.416GluLys: 1.416 ± 0.908
4.958GluLeu: 4.958 ± 3.179
0.708GluMet: 0.708 ± 0.454
1.416GluAsn: 1.416 ± 0.031
1.416GluPro: 1.416 ± 0.031
3.541GluGln: 3.541 ± 1.488
1.416GluArg: 1.416 ± 0.908
2.833GluSer: 2.833 ± 0.063
2.833GluThr: 2.833 ± 0.877
2.833GluVal: 2.833 ± 1.942
0.708GluTrp: 0.708 ± 0.454
0.708GluTyr: 0.708 ± 0.454
0.0GluXaa: 0.0 ± 0.0
Phe
7.082PheAla: 7.082 ± 1.096
1.416PheCys: 1.416 ± 0.908
2.833PheAsp: 2.833 ± 1.002
3.541PheGlu: 3.541 ± 0.548
2.833PhePhe: 2.833 ± 1.817
4.249PheGly: 4.249 ± 0.846
2.833PheHis: 2.833 ± 0.063
4.249PheIle: 4.249 ± 2.725
0.708PheLys: 0.708 ± 0.454
7.79PheLeu: 7.79 ± 0.642
2.125PheMet: 2.125 ± 1.363
4.958PheAsn: 4.958 ± 1.3
4.249PhePro: 4.249 ± 1.785
1.416PheGln: 1.416 ± 0.031
4.958PheArg: 4.958 ± 0.36
1.416PheSer: 1.416 ± 0.031
7.082PheThr: 7.082 ± 1.723
4.958PheVal: 4.958 ± 2.459
0.0PheTrp: 0.0 ± 0.0
2.125PheTyr: 2.125 ± 0.423
0.0PheXaa: 0.0 ± 0.0
Gly
1.416GlyAla: 1.416 ± 0.971
0.708GlyCys: 0.708 ± 0.454
2.833GlyAsp: 2.833 ± 0.063
0.0GlyGlu: 0.0 ± 0.0
2.833GlyPhe: 2.833 ± 0.063
0.0GlyGly: 0.0 ± 0.0
1.416GlyHis: 1.416 ± 0.971
0.708GlyIle: 0.708 ± 0.454
2.833GlyLys: 2.833 ± 1.002
2.833GlyLeu: 2.833 ± 0.877
1.416GlyMet: 1.416 ± 0.031
2.125GlyAsn: 2.125 ± 0.423
1.416GlyPro: 1.416 ± 0.908
0.0GlyGln: 0.0 ± 0.0
0.0GlyArg: 0.0 ± 0.0
2.125GlySer: 2.125 ± 0.517
4.249GlyThr: 4.249 ± 0.846
1.416GlyVal: 1.416 ± 0.031
0.0GlyTrp: 0.0 ± 0.0
7.082GlyTyr: 7.082 ± 0.156
0.0GlyXaa: 0.0 ± 0.0
His
1.416HisAla: 1.416 ± 0.031
0.0HisCys: 0.0 ± 0.0
2.125HisAsp: 2.125 ± 0.423
2.833HisGlu: 2.833 ± 0.877
3.541HisPhe: 3.541 ± 1.331
4.249HisGly: 4.249 ± 0.094
0.708HisHis: 0.708 ± 0.485
1.416HisIle: 1.416 ± 0.031
2.125HisLys: 2.125 ± 0.517
2.833HisLeu: 2.833 ± 0.063
0.0HisMet: 0.0 ± 0.0
1.416HisAsn: 1.416 ± 0.031
3.541HisPro: 3.541 ± 0.548
0.0HisGln: 0.0 ± 0.0
1.416HisArg: 1.416 ± 0.031
4.958HisSer: 4.958 ± 0.579
0.708HisThr: 0.708 ± 0.454
0.708HisVal: 0.708 ± 0.485
0.0HisTrp: 0.0 ± 0.0
0.708HisTyr: 0.708 ± 0.485
0.0HisXaa: 0.0 ± 0.0
Ile
2.833IleAla: 2.833 ± 1.002
0.0IleCys: 0.0 ± 0.0
8.499IleAsp: 8.499 ± 1.127
4.249IleGlu: 4.249 ± 0.094
2.833IlePhe: 2.833 ± 1.002
2.125IleGly: 2.125 ± 0.517
2.125IleHis: 2.125 ± 0.423
2.833IleIle: 2.833 ± 0.063
3.541IleLys: 3.541 ± 2.271
2.833IleLeu: 2.833 ± 1.002
2.125IleMet: 2.125 ± 1.363
2.833IleAsn: 2.833 ± 0.063
4.249IlePro: 4.249 ± 0.094
1.416IleGln: 1.416 ± 0.031
4.958IleArg: 4.958 ± 2.24
8.499IleSer: 8.499 ± 0.752
3.541IleThr: 3.541 ± 0.392
2.833IleVal: 2.833 ± 1.002
0.0IleTrp: 0.0 ± 0.0
4.249IleTyr: 4.249 ± 1.033
0.0IleXaa: 0.0 ± 0.0
Lys
2.125LysAla: 2.125 ± 0.517
0.708LysCys: 0.708 ± 0.485
1.416LysAsp: 1.416 ± 0.031
0.708LysGlu: 0.708 ± 0.454
1.416LysPhe: 1.416 ± 0.971
0.708LysGly: 0.708 ± 0.454
2.125LysHis: 2.125 ± 0.423
4.958LysIle: 4.958 ± 1.519
0.0LysLys: 0.0 ± 0.0
6.374LysLeu: 6.374 ± 1.269
0.708LysMet: 0.708 ± 0.454
2.125LysAsn: 2.125 ± 0.517
3.541LysPro: 3.541 ± 2.271
2.125LysGln: 2.125 ± 0.423
2.125LysArg: 2.125 ± 0.423
3.541LysSer: 3.541 ± 0.392
2.125LysThr: 2.125 ± 0.423
2.833LysVal: 2.833 ± 0.063
0.708LysTrp: 0.708 ± 0.454
1.416LysTyr: 1.416 ± 0.908
0.0LysXaa: 0.0 ± 0.0
Leu
7.082LeuAla: 7.082 ± 2.036
0.708LeuCys: 0.708 ± 0.485
6.374LeuAsp: 6.374 ± 2.208
4.958LeuGlu: 4.958 ± 1.3
6.374LeuPhe: 6.374 ± 0.611
0.708LeuGly: 0.708 ± 0.485
2.833LeuHis: 2.833 ± 0.877
7.79LeuIle: 7.79 ± 3.117
3.541LeuLys: 3.541 ± 2.271
7.082LeuLeu: 7.082 ± 1.723
1.416LeuMet: 1.416 ± 0.031
3.541LeuAsn: 3.541 ± 1.488
8.499LeuPro: 8.499 ± 1.127
1.416LeuGln: 1.416 ± 0.971
4.249LeuArg: 4.249 ± 0.094
8.499LeuSer: 8.499 ± 0.188
5.666LeuThr: 5.666 ± 0.125
3.541LeuVal: 3.541 ± 1.331
0.0LeuTrp: 0.0 ± 0.0
4.249LeuTyr: 4.249 ± 0.846
0.0LeuXaa: 0.0 ± 0.0
Met
0.708MetAla: 0.708 ± 0.454
0.0MetCys: 0.0 ± 0.0
0.708MetAsp: 0.708 ± 0.454
2.833MetGlu: 2.833 ± 1.817
1.416MetPhe: 1.416 ± 0.908
0.708MetGly: 0.708 ± 0.454
0.708MetHis: 0.708 ± 0.454
0.708MetIle: 0.708 ± 0.485
0.0MetLys: 0.0 ± 0.0
3.541MetLeu: 3.541 ± 2.271
1.416MetMet: 1.416 ± 0.335
1.416MetAsn: 1.416 ± 0.908
2.833MetPro: 2.833 ± 0.063
0.0MetGln: 0.0 ± 0.0
0.0MetArg: 0.0 ± 0.0
2.833MetSer: 2.833 ± 0.063
0.0MetThr: 0.0 ± 0.0
1.416MetVal: 1.416 ± 0.031
0.0MetTrp: 0.0 ± 0.0
1.416MetTyr: 1.416 ± 0.031
0.0MetXaa: 0.0 ± 0.0
Asn
7.082AsnAla: 7.082 ± 2.036
0.0AsnCys: 0.0 ± 0.0
0.708AsnAsp: 0.708 ± 0.485
0.708AsnGlu: 0.708 ± 0.454
7.082AsnPhe: 7.082 ± 0.783
2.125AsnGly: 2.125 ± 1.456
0.708AsnHis: 0.708 ± 0.454
4.249AsnIle: 4.249 ± 1.785
2.833AsnLys: 2.833 ± 0.063
6.374AsnLeu: 6.374 ± 1.55
1.416AsnMet: 1.416 ± 0.908
2.125AsnAsn: 2.125 ± 0.517
2.125AsnPro: 2.125 ± 0.517
0.0AsnGln: 0.0 ± 0.0
2.833AsnArg: 2.833 ± 0.877
3.541AsnSer: 3.541 ± 0.548
3.541AsnThr: 3.541 ± 1.488
4.958AsnVal: 4.958 ± 1.519
0.708AsnTrp: 0.708 ± 0.454
1.416AsnTyr: 1.416 ± 0.031
0.0AsnXaa: 0.0 ± 0.0
Pro
2.833ProAla: 2.833 ± 0.877
0.0ProCys: 0.0 ± 0.0
4.249ProAsp: 4.249 ± 1.033
6.374ProGlu: 6.374 ± 1.269
2.125ProPhe: 2.125 ± 0.423
3.541ProGly: 3.541 ± 0.392
0.0ProHis: 0.0 ± 0.0
5.666ProIle: 5.666 ± 2.004
4.249ProLys: 4.249 ± 0.846
2.833ProLeu: 2.833 ± 1.817
0.0ProMet: 0.0 ± 0.0
1.416ProAsn: 1.416 ± 0.031
4.958ProPro: 4.958 ± 0.579
3.541ProGln: 3.541 ± 0.392
2.125ProArg: 2.125 ± 0.517
7.082ProSer: 7.082 ± 1.096
7.79ProThr: 7.79 ± 0.642
4.958ProVal: 4.958 ± 1.519
1.416ProTrp: 1.416 ± 0.031
2.125ProTyr: 2.125 ± 0.517
0.0ProXaa: 0.0 ± 0.0
Gln
1.416GlnAla: 1.416 ± 0.031
0.0GlnCys: 0.0 ± 0.0
2.125GlnAsp: 2.125 ± 0.423
0.0GlnGlu: 0.0 ± 0.0
3.541GlnPhe: 3.541 ± 2.271
2.125GlnGly: 2.125 ± 0.517
1.416GlnHis: 1.416 ± 0.031
3.541GlnIle: 3.541 ± 0.548
1.416GlnLys: 1.416 ± 0.971
2.125GlnLeu: 2.125 ± 0.423
0.0GlnMet: 0.0 ± 0.0
2.125GlnAsn: 2.125 ± 1.456
3.541GlnPro: 3.541 ± 1.488
0.0GlnGln: 0.0 ± 0.0
0.708GlnArg: 0.708 ± 0.454
0.0GlnSer: 0.0 ± 0.0
0.0GlnThr: 0.0 ± 0.0
2.125GlnVal: 2.125 ± 1.456
0.0GlnTrp: 0.0 ± 0.0
1.416GlnTyr: 1.416 ± 0.031
0.0GlnXaa: 0.0 ± 0.0
Arg
3.541ArgAla: 3.541 ± 0.392
0.708ArgCys: 0.708 ± 0.454
7.79ArgAsp: 7.79 ± 0.642
0.0ArgGlu: 0.0 ± 0.0
1.416ArgPhe: 1.416 ± 0.908
1.416ArgGly: 1.416 ± 0.031
3.541ArgHis: 3.541 ± 1.488
0.708ArgIle: 0.708 ± 0.454
1.416ArgLys: 1.416 ± 0.908
3.541ArgLeu: 3.541 ± 0.392
0.708ArgMet: 0.708 ± 0.485
4.958ArgAsn: 4.958 ± 2.24
6.374ArgPro: 6.374 ± 1.269
2.125ArgGln: 2.125 ± 0.423
4.249ArgArg: 4.249 ± 1.785
2.833ArgSer: 2.833 ± 0.063
2.833ArgThr: 2.833 ± 1.942
2.125ArgVal: 2.125 ± 0.517
0.708ArgTrp: 0.708 ± 0.454
2.125ArgTyr: 2.125 ± 0.517
0.0ArgXaa: 0.0 ± 0.0
Ser
5.666SerAla: 5.666 ± 2.944
0.708SerCys: 0.708 ± 0.454
4.958SerAsp: 4.958 ± 0.36
2.125SerGlu: 2.125 ± 0.423
7.082SerPhe: 7.082 ± 0.783
2.833SerGly: 2.833 ± 0.877
3.541SerHis: 3.541 ± 0.548
2.833SerIle: 2.833 ± 0.063
7.79SerLys: 7.79 ± 1.237
9.915SerLeu: 9.915 ± 3.038
0.708SerMet: 0.708 ± 0.454
5.666SerAsn: 5.666 ± 0.125
5.666SerPro: 5.666 ± 2.944
0.0SerGln: 0.0 ± 0.0
2.125SerArg: 2.125 ± 0.517
4.249SerSer: 4.249 ± 1.973
5.666SerThr: 5.666 ± 2.004
4.249SerVal: 4.249 ± 1.973
1.416SerTrp: 1.416 ± 0.971
4.958SerTyr: 4.958 ± 1.3
0.0SerXaa: 0.0 ± 0.0
Thr
4.249ThrAla: 4.249 ± 1.033
0.0ThrCys: 0.0 ± 0.0
5.666ThrAsp: 5.666 ± 1.754
3.541ThrGlu: 3.541 ± 0.392
4.958ThrPhe: 4.958 ± 0.579
3.541ThrGly: 3.541 ± 0.548
0.0ThrHis: 0.0 ± 0.0
4.249ThrIle: 4.249 ± 0.094
2.125ThrLys: 2.125 ± 1.363
8.499ThrLeu: 8.499 ± 1.127
1.416ThrMet: 1.416 ± 0.908
3.541ThrAsn: 3.541 ± 1.488
2.833ThrPro: 2.833 ± 0.063
2.833ThrGln: 2.833 ± 1.002
5.666ThrArg: 5.666 ± 0.125
4.958ThrSer: 4.958 ± 0.36
1.416ThrThr: 1.416 ± 0.908
2.125ThrVal: 2.125 ± 0.423
2.125ThrTrp: 2.125 ± 0.517
2.125ThrTyr: 2.125 ± 0.517
0.0ThrXaa: 0.0 ± 0.0
Val
2.125ValAla: 2.125 ± 0.517
0.708ValCys: 0.708 ± 0.485
3.541ValAsp: 3.541 ± 0.548
0.708ValGlu: 0.708 ± 0.454
3.541ValPhe: 3.541 ± 1.488
0.0ValGly: 0.0 ± 0.0
0.708ValHis: 0.708 ± 0.454
4.249ValIle: 4.249 ± 1.033
2.833ValLys: 2.833 ± 1.942
3.541ValLeu: 3.541 ± 2.427
1.416ValMet: 1.416 ± 0.788
1.416ValAsn: 1.416 ± 0.031
3.541ValPro: 3.541 ± 1.488
2.125ValGln: 2.125 ± 0.517
3.541ValArg: 3.541 ± 0.392
4.249ValSer: 4.249 ± 1.973
2.833ValThr: 2.833 ± 0.063
0.708ValVal: 0.708 ± 0.485
1.416ValTrp: 1.416 ± 0.031
4.958ValTyr: 4.958 ± 0.579
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.0TrpGlu: 0.0 ± 0.0
1.416TrpPhe: 1.416 ± 0.031
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
1.416TrpIle: 1.416 ± 0.031
0.708TrpLys: 0.708 ± 0.485
0.708TrpLeu: 0.708 ± 0.485
0.0TrpMet: 0.0 ± 0.0
2.125TrpAsn: 2.125 ± 0.423
0.708TrpPro: 0.708 ± 0.485
0.0TrpGln: 0.0 ± 0.0
0.0TrpArg: 0.0 ± 0.0
2.125TrpSer: 2.125 ± 0.423
0.708TrpThr: 0.708 ± 0.454
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.708TrpTyr: 0.708 ± 0.454
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.833TyrAla: 2.833 ± 1.817
2.833TyrCys: 2.833 ± 0.877
3.541TyrAsp: 3.541 ± 0.392
1.416TyrGlu: 1.416 ± 0.031
4.249TyrPhe: 4.249 ± 0.846
2.833TyrGly: 2.833 ± 0.063
4.249TyrHis: 4.249 ± 0.094
2.125TyrIle: 2.125 ± 0.423
0.708TyrLys: 0.708 ± 0.485
4.249TyrLeu: 4.249 ± 1.785
2.833TyrMet: 2.833 ± 1.817
2.833TyrAsn: 2.833 ± 1.002
3.541TyrPro: 3.541 ± 0.392
0.708TyrGln: 0.708 ± 0.485
2.833TyrArg: 2.833 ± 0.877
3.541TyrSer: 3.541 ± 2.427
1.416TyrThr: 1.416 ± 0.031
2.833TyrVal: 2.833 ± 1.002
0.0TyrTrp: 0.0 ± 0.0
1.416TyrTyr: 1.416 ± 0.908
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (1413 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski