Trichoderma arundinaceum

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; sordariomyceta; Sordariomycetes; Hypocreomycetidae; Hypocreales; Hypocreaceae; Trichoderma

Average proteome isoelectric point is 6.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 10471 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A395NDV8|A0A395NDV8_TRIAR Major facilitator superfamily transporter OS=Trichoderma arundinaceum OX=490622 GN=TARUN_8314 PE=4 SV=1
MM1 pKa = 7.25QLTTAIFTTLCLALSATADD20 pKa = 3.45QRR22 pKa = 11.84ICFPLPGDD30 pKa = 3.99EE31 pKa = 4.1NTIPQAILDD40 pKa = 4.53LDD42 pKa = 4.09SQTKK46 pKa = 10.25LNWAATLCSQLTFPSDD62 pKa = 3.39GLQEE66 pKa = 4.52AKK68 pKa = 9.41TAAADD73 pKa = 4.91GILGDD78 pKa = 4.41DD79 pKa = 3.37GRR81 pKa = 11.84LYY83 pKa = 10.91GLEE86 pKa = 4.09LAVHH90 pKa = 7.59DD91 pKa = 4.65IQTEE95 pKa = 4.19DD96 pKa = 3.28NCRR99 pKa = 11.84VNANALLGAGACPGGGLLTLSGPLEE124 pKa = 3.79QWSYY128 pKa = 9.21ITALNN133 pKa = 3.6

Molecular weight: 13.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A395NKJ3|A0A395NKJ3_TRIAR Methylisocitrate lyase OS=Trichoderma arundinaceum OX=490622 GN=TARUN_5645 PE=4 SV=1
PP1 pKa = 7.05KK2 pKa = 10.06RR3 pKa = 11.84AGGSSRR9 pKa = 11.84GGPRR13 pKa = 11.84GGGRR17 pKa = 11.84GGFSRR22 pKa = 11.84GGRR25 pKa = 11.84GGPGGFGGRR34 pKa = 11.84GGRR37 pKa = 11.84GGSGGFSRR45 pKa = 11.84GGGGGFGGRR54 pKa = 11.84GGRR57 pKa = 11.84GGSGGFSRR65 pKa = 11.84GGAPGGGRR73 pKa = 11.84GRR75 pKa = 11.84GGFSRR80 pKa = 11.84GGRR83 pKa = 3.49

Molecular weight: 7.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

10471

0

10471

5304629

18

23058

506.6

55.95

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.923 ± 0.025

1.176 ± 0.01

5.786 ± 0.018

6.168 ± 0.025

3.709 ± 0.014

6.94 ± 0.03

2.35 ± 0.011

5.1 ± 0.02

4.862 ± 0.022

8.902 ± 0.026

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.175 ± 0.011

3.699 ± 0.015

5.953 ± 0.026

4.052 ± 0.017

5.971 ± 0.021

8.259 ± 0.029

5.74 ± 0.017

6.067 ± 0.018

1.459 ± 0.009

2.707 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski