Capybara microvirus Cap3_SP_414

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.72

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W5U7|A0A4P8W5U7_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_414 OX=2585447 PE=4 SV=1
MM1 pKa = 7.56SNNKK5 pKa = 8.81IFQAEE10 pKa = 4.13IVEE13 pKa = 4.48KK14 pKa = 10.11EE15 pKa = 4.01YY16 pKa = 10.94QSRR19 pKa = 11.84NEE21 pKa = 3.76FDD23 pKa = 3.51FTHH26 pKa = 7.52DD27 pKa = 3.55NLTTLDD33 pKa = 3.7MGNIVPLDD41 pKa = 3.79SVLLFPGDD49 pKa = 3.15ICDD52 pKa = 4.0ISSEE56 pKa = 4.88TYY58 pKa = 10.15FQTHH62 pKa = 6.0PCITNLLSKK71 pKa = 9.51VYY73 pKa = 10.31CDD75 pKa = 3.93EE76 pKa = 5.07LDD78 pKa = 4.76FIAPLSRR85 pKa = 11.84VWTLWQDD92 pKa = 3.71YY93 pKa = 9.94ISPGNGTRR101 pKa = 11.84PLSHH105 pKa = 7.12TDD107 pKa = 3.23PYY109 pKa = 10.12RR110 pKa = 11.84TPTKK114 pKa = 9.88PYY116 pKa = 10.23FVFEE120 pKa = 4.9DD121 pKa = 4.05IILASLQTSFSILNFDD137 pKa = 4.56INFTYY142 pKa = 10.95APMKK146 pKa = 9.89QRR148 pKa = 11.84QFMLIDD154 pKa = 3.57YY155 pKa = 8.78LHH157 pKa = 6.59YY158 pKa = 10.12PIQNFISRR166 pKa = 11.84SDD168 pKa = 3.64LDD170 pKa = 3.91LSNLHH175 pKa = 5.92TFRR178 pKa = 11.84NYY180 pKa = 10.11VKK182 pKa = 10.74LSQTNQTPINLKK194 pKa = 10.54RR195 pKa = 11.84IGLTPNYY202 pKa = 9.61YY203 pKa = 10.15RR204 pKa = 11.84GVANLLNDD212 pKa = 4.89LLPTSLQNKK221 pKa = 9.18IYY223 pKa = 9.32IHH225 pKa = 5.13QVYY228 pKa = 9.86EE229 pKa = 4.21EE230 pKa = 4.31VGKK233 pKa = 10.94VPYY236 pKa = 10.09NAIIYY241 pKa = 10.4LSDD244 pKa = 4.25VINAWLYY251 pKa = 10.25DD252 pKa = 3.72LEE254 pKa = 5.98IIFPVNYY261 pKa = 9.59YY262 pKa = 10.75NDD264 pKa = 3.57VSSVPDD270 pKa = 3.87FNEE273 pKa = 4.35IILLSIIEE281 pKa = 4.33CLANQKK287 pKa = 10.26SDD289 pKa = 3.41PLVYY293 pKa = 10.33CNSDD297 pKa = 2.76IYY299 pKa = 11.41DD300 pKa = 3.99PYY302 pKa = 11.49HH303 pKa = 6.05DD304 pKa = 4.41VKK306 pKa = 11.44YY307 pKa = 10.99NDD309 pKa = 3.09YY310 pKa = 11.3SYY312 pKa = 11.41FRR314 pKa = 11.84NNNLNLVMYY323 pKa = 10.04YY324 pKa = 10.65CDD326 pKa = 3.9FANSFPSEE334 pKa = 4.0TKK336 pKa = 10.44EE337 pKa = 3.65ILKK340 pKa = 10.3KK341 pKa = 10.42CFYY344 pKa = 10.03VAGGVRR350 pKa = 11.84QTIYY354 pKa = 10.52KK355 pKa = 9.84VEE357 pKa = 4.22PNEE360 pKa = 4.85LDD362 pKa = 3.27TTNYY366 pKa = 9.91QVIDD370 pKa = 3.63ALEE373 pKa = 4.41FYY375 pKa = 10.57AYY377 pKa = 10.82LKK379 pKa = 10.04VCCDD383 pKa = 3.37YY384 pKa = 11.06FRR386 pKa = 11.84DD387 pKa = 3.62QNYY390 pKa = 10.58DD391 pKa = 3.04ILEE394 pKa = 4.13VLISEE399 pKa = 4.59SVKK402 pKa = 11.09SNLNSKK408 pKa = 9.84FQLTQEE414 pKa = 5.16GYY416 pKa = 10.26LSPSSIPEE424 pKa = 4.2LFVSCYY430 pKa = 9.97KK431 pKa = 10.31KK432 pKa = 10.72DD433 pKa = 3.77YY434 pKa = 8.15FTTATEE440 pKa = 4.05TAQRR444 pKa = 11.84GNPIEE449 pKa = 4.61IPTTYY454 pKa = 8.77ITLPDD459 pKa = 3.89PVIGGTASKK468 pKa = 11.06VRR470 pKa = 11.84MNVFDD475 pKa = 4.03PQNPFVIFDD484 pKa = 3.93NDD486 pKa = 3.21STMKK490 pKa = 10.4SLSISGTSQPLTVLDD505 pKa = 3.68LRR507 pKa = 11.84KK508 pKa = 10.15YY509 pKa = 10.4ISINHH514 pKa = 5.27YY515 pKa = 10.57VEE517 pKa = 4.68SCLTSGMRR525 pKa = 11.84YY526 pKa = 9.82AEE528 pKa = 4.32YY529 pKa = 9.81FYY531 pKa = 9.87MQWDD535 pKa = 4.07VVVPDD540 pKa = 4.44AVTQEE545 pKa = 4.29TEE547 pKa = 4.58LINAKK552 pKa = 9.3NQIFNFQKK560 pKa = 10.61VVNTGNNDD568 pKa = 3.35LPLGSLASNGFSIDD582 pKa = 3.15SSSSQRR588 pKa = 11.84IHH590 pKa = 6.07QNEE593 pKa = 3.73HH594 pKa = 5.1AFYY597 pKa = 10.25FKK599 pKa = 10.56FIRR602 pKa = 11.84ILPDD606 pKa = 3.41LYY608 pKa = 11.0YY609 pKa = 11.03YY610 pKa = 11.14GGIQRR615 pKa = 11.84NKK617 pKa = 10.35LFQKK621 pKa = 10.61YY622 pKa = 9.91LDD624 pKa = 3.78YY625 pKa = 10.81PLPQFSSLGNEE636 pKa = 3.88EE637 pKa = 4.36IYY639 pKa = 11.19SNEE642 pKa = 3.69VLFQFSNAKK651 pKa = 10.47NIFGYY656 pKa = 9.81NSRR659 pKa = 11.84YY660 pKa = 9.77SYY662 pKa = 11.76SKK664 pKa = 10.76FEE666 pKa = 4.37PNKK669 pKa = 10.28VSGDD673 pKa = 3.63FCNSLSSQAFIRR685 pKa = 11.84NLNEE689 pKa = 3.62EE690 pKa = 4.57DD691 pKa = 3.47SDD693 pKa = 4.27LSLRR697 pKa = 11.84CSYY700 pKa = 10.61EE701 pKa = 3.77FNLVVNDD708 pKa = 3.6KK709 pKa = 11.06RR710 pKa = 11.84PFAVISPNYY719 pKa = 9.88DD720 pKa = 3.0SYY722 pKa = 11.56ICHH725 pKa = 6.8SLIKK729 pKa = 10.16FNNWRR734 pKa = 11.84KK735 pKa = 9.69LPVYY739 pKa = 8.98GLPGIHH745 pKa = 6.98TII747 pKa = 4.58

Molecular weight: 86.53 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W619|A0A4P8W619_9VIRU Replication initiator protein OS=Capybara microvirus Cap3_SP_414 OX=2585447 PE=4 SV=1
MM1 pKa = 7.56NYY3 pKa = 10.07KK4 pKa = 10.17KK5 pKa = 10.27QFKK8 pKa = 10.25NFRR11 pKa = 11.84NNDD14 pKa = 2.9FFINYY19 pKa = 8.15DD20 pKa = 3.25KK21 pKa = 10.96SYY23 pKa = 11.25KK24 pKa = 9.98NLPTIQGDD32 pKa = 3.86VNRR35 pKa = 11.84GISNLIQRR43 pKa = 11.84YY44 pKa = 8.67NRR46 pKa = 11.84GLPLPNDD53 pKa = 3.48AVQVSFGYY61 pKa = 8.65TLEE64 pKa = 4.35ASSPFTPDD72 pKa = 3.21KK73 pKa = 11.32LEE75 pKa = 4.07LAIKK79 pKa = 10.25SKK81 pKa = 10.67QFNNTLSDD89 pKa = 3.29VKK91 pKa = 10.13TQLEE95 pKa = 4.25KK96 pKa = 10.77QIKK99 pKa = 8.12TKK101 pKa = 9.63EE102 pKa = 4.0LEE104 pKa = 3.92KK105 pKa = 10.74RR106 pKa = 11.84SAVEE110 pKa = 3.48NTGNIEE116 pKa = 4.09TSTTSS121 pKa = 2.78

Molecular weight: 13.89 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1574

121

747

314.8

36.67

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.066 ± 1.042

1.271 ± 0.416

5.972 ± 0.631

4.956 ± 0.451

6.099 ± 0.907

3.177 ± 0.282

1.398 ± 0.368

7.243 ± 0.554

7.306 ± 1.575

9.466 ± 0.327

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.334 ± 0.336

9.657 ± 0.659

4.257 ± 0.704

5.083 ± 0.554

3.367 ± 0.235

7.687 ± 0.791

5.337 ± 0.504

4.701 ± 0.753

0.508 ± 0.129

7.116 ± 0.844
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski