Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_414

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
0.636AlaAla: 0.636 ± 0.739
0.636AlaCys: 0.636 ± 0.623
0.636AlaAsp: 0.636 ± 0.739
1.907AlaGlu: 1.907 ± 0.671
1.907AlaPhe: 1.907 ± 0.671
2.543AlaGly: 2.543 ± 2.017
0.0AlaHis: 0.0 ± 0.0
3.814AlaIle: 3.814 ± 1.642
3.179AlaLys: 3.179 ± 1.02
4.45AlaLeu: 4.45 ± 2.602
0.636AlaMet: 0.636 ± 0.739
5.086AlaAsn: 5.086 ± 2.343
2.543AlaPro: 2.543 ± 1.21
1.907AlaGln: 1.907 ± 1.293
0.0AlaArg: 0.0 ± 0.0
3.179AlaSer: 3.179 ± 0.973
0.636AlaThr: 0.636 ± 0.388
3.814AlaVal: 3.814 ± 1.528
1.271AlaTrp: 1.271 ± 0.518
1.907AlaTyr: 1.907 ± 0.59
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.636CysCys: 0.636 ± 0.388
2.543CysAsp: 2.543 ± 1.551
0.0CysGlu: 0.0 ± 0.0
0.636CysPhe: 0.636 ± 0.388
0.636CysGly: 0.636 ± 0.623
0.636CysHis: 0.636 ± 0.388
0.636CysIle: 0.636 ± 0.388
0.0CysLys: 0.0 ± 0.0
1.907CysLeu: 1.907 ± 0.671
0.0CysMet: 0.0 ± 0.0
1.271CysAsn: 1.271 ± 0.775
0.636CysPro: 0.636 ± 0.623
0.0CysGln: 0.0 ± 0.0
1.271CysArg: 1.271 ± 0.957
0.636CysSer: 0.636 ± 0.388
0.0CysThr: 0.0 ± 0.0
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
1.271CysTyr: 1.271 ± 0.518
0.0CysXaa: 0.0 ± 0.0
Asp
3.179AspAla: 3.179 ± 1.137
0.0AspCys: 0.0 ± 0.0
1.271AspAsp: 1.271 ± 1.477
0.636AspGlu: 0.636 ± 0.388
6.993AspPhe: 6.993 ± 2.796
0.636AspGly: 0.636 ± 0.739
0.0AspHis: 0.0 ± 0.0
5.086AspIle: 5.086 ± 1.93
5.722AspLys: 5.722 ± 2.81
8.264AspLeu: 8.264 ± 2.322
0.636AspMet: 0.636 ± 0.388
4.45AspAsn: 4.45 ± 1.628
3.814AspPro: 3.814 ± 1.629
1.271AspGln: 1.271 ± 0.518
0.636AspArg: 0.636 ± 0.739
4.45AspSer: 4.45 ± 1.516
2.543AspThr: 2.543 ± 1.379
4.45AspVal: 4.45 ± 1.283
0.636AspTrp: 0.636 ± 0.739
5.086AspTyr: 5.086 ± 1.615
0.0AspXaa: 0.0 ± 0.0
Glu
2.543GluAla: 2.543 ± 1.702
0.636GluCys: 0.636 ± 0.388
1.907GluAsp: 1.907 ± 0.671
2.543GluGlu: 2.543 ± 1.214
3.179GluPhe: 3.179 ± 1.247
0.636GluGly: 0.636 ± 0.388
0.636GluHis: 0.636 ± 0.388
5.086GluIle: 5.086 ± 1.865
4.45GluLys: 4.45 ± 2.258
5.722GluLeu: 5.722 ± 1.705
0.0GluMet: 0.0 ± 0.0
3.179GluAsn: 3.179 ± 2.004
1.907GluPro: 1.907 ± 0.93
0.636GluGln: 0.636 ± 0.739
0.636GluArg: 0.636 ± 0.739
2.543GluSer: 2.543 ± 1.492
5.086GluThr: 5.086 ± 0.643
2.543GluVal: 2.543 ± 0.965
0.0GluTrp: 0.0 ± 0.0
5.722GluTyr: 5.722 ± 2.633
0.0GluXaa: 0.0 ± 0.0
Phe
1.907PheAla: 1.907 ± 0.671
0.636PheCys: 0.636 ± 0.388
5.086PheAsp: 5.086 ± 2.073
3.179PheGlu: 3.179 ± 1.573
1.907PhePhe: 1.907 ± 1.399
1.907PheGly: 1.907 ± 1.05
0.0PheHis: 0.0 ± 0.0
5.086PheIle: 5.086 ± 1.701
3.814PheLys: 3.814 ± 1.471
1.271PheLeu: 1.271 ± 1.477
0.636PheMet: 0.636 ± 0.388
9.536PheAsn: 9.536 ± 2.369
2.543PhePro: 2.543 ± 0.965
5.086PheGln: 5.086 ± 1.962
3.814PheArg: 3.814 ± 1.122
5.086PheSer: 5.086 ± 1.216
3.179PheThr: 3.179 ± 1.215
3.179PheVal: 3.179 ± 1.134
0.0PheTrp: 0.0 ± 0.0
3.179PheTyr: 3.179 ± 1.543
0.0PheXaa: 0.0 ± 0.0
Gly
0.636GlyAla: 0.636 ± 0.739
0.0GlyCys: 0.0 ± 0.0
1.907GlyAsp: 1.907 ± 0.814
0.0GlyGlu: 0.0 ± 0.0
1.271GlyPhe: 1.271 ± 0.518
1.907GlyGly: 1.907 ± 1.163
0.0GlyHis: 0.0 ± 0.0
3.814GlyIle: 3.814 ± 0.799
1.271GlyLys: 1.271 ± 0.605
3.814GlyLeu: 3.814 ± 1.042
0.636GlyMet: 0.636 ± 0.388
5.086GlyAsn: 5.086 ± 0.956
1.907GlyPro: 1.907 ± 1.435
0.0GlyGln: 0.0 ± 0.0
0.636GlyArg: 0.636 ± 0.623
0.636GlySer: 0.636 ± 0.388
2.543GlyThr: 2.543 ± 0.953
2.543GlyVal: 2.543 ± 0.446
0.0GlyTrp: 0.0 ± 0.0
3.179GlyTyr: 3.179 ± 1.26
0.0GlyXaa: 0.0 ± 0.0
His
0.636HisAla: 0.636 ± 0.388
0.0HisCys: 0.0 ± 0.0
1.271HisAsp: 1.271 ± 0.775
0.0HisGlu: 0.0 ± 0.0
1.907HisPhe: 1.907 ± 1.435
0.636HisGly: 0.636 ± 0.623
0.636HisHis: 0.636 ± 0.741
0.636HisIle: 0.636 ± 0.623
0.0HisLys: 0.0 ± 0.0
0.636HisLeu: 0.636 ± 0.741
0.0HisMet: 0.0 ± 0.0
0.636HisAsn: 0.636 ± 0.623
1.271HisPro: 1.271 ± 0.518
1.271HisGln: 1.271 ± 0.775
0.0HisArg: 0.0 ± 0.0
0.636HisSer: 0.636 ± 0.388
1.907HisThr: 1.907 ± 1.163
0.0HisVal: 0.0 ± 0.0
0.0HisTrp: 0.0 ± 0.0
1.907HisTyr: 1.907 ± 0.671
0.0HisXaa: 0.0 ± 0.0
Ile
1.907IleAla: 1.907 ± 1.293
1.271IleCys: 1.271 ± 0.775
4.45IleAsp: 4.45 ± 0.765
3.814IleGlu: 3.814 ± 1.452
4.45IlePhe: 4.45 ± 1.247
2.543IleGly: 2.543 ± 0.446
2.543IleHis: 2.543 ± 0.965
5.086IleIle: 5.086 ± 1.745
3.179IleLys: 3.179 ± 1.757
5.722IleLeu: 5.722 ± 2.79
1.271IleMet: 1.271 ± 0.63
8.9IleAsn: 8.9 ± 1.548
1.907IlePro: 1.907 ± 0.698
3.179IleGln: 3.179 ± 1.495
1.907IleArg: 1.907 ± 0.93
6.993IleSer: 6.993 ± 1.526
5.086IleThr: 5.086 ± 2.045
2.543IleVal: 2.543 ± 0.75
0.0IleTrp: 0.0 ± 0.0
5.722IleTyr: 5.722 ± 0.919
0.0IleXaa: 0.0 ± 0.0
Lys
3.179LysAla: 3.179 ± 2.493
1.271LysCys: 1.271 ± 0.518
4.45LysAsp: 4.45 ± 3.407
3.814LysGlu: 3.814 ± 1.181
3.179LysPhe: 3.179 ± 1.543
1.271LysGly: 1.271 ± 0.893
1.271LysHis: 1.271 ± 0.957
4.45LysIle: 4.45 ± 1.786
6.357LysLys: 6.357 ± 2.05
7.629LysLeu: 7.629 ± 2.993
1.271LysMet: 1.271 ± 1.432
6.357LysAsn: 6.357 ± 2.718
0.636LysPro: 0.636 ± 0.388
5.086LysGln: 5.086 ± 2.853
2.543LysArg: 2.543 ± 0.859
8.9LysSer: 8.9 ± 2.763
1.907LysThr: 1.907 ± 1.805
5.086LysVal: 5.086 ± 2.421
0.0LysTrp: 0.0 ± 0.0
3.814LysTyr: 3.814 ± 1.555
0.0LysXaa: 0.0 ± 0.0
Leu
4.45LeuAla: 4.45 ± 1.035
0.0LeuCys: 0.0 ± 0.0
10.807LeuAsp: 10.807 ± 2.673
7.629LeuGlu: 7.629 ± 3.761
5.722LeuPhe: 5.722 ± 1.726
2.543LeuGly: 2.543 ± 0.831
3.179LeuHis: 3.179 ± 1.138
5.086LeuIle: 5.086 ± 0.705
4.45LeuLys: 4.45 ± 1.569
5.722LeuLeu: 5.722 ± 1.3
1.271LeuMet: 1.271 ± 0.838
6.357LeuAsn: 6.357 ± 1.127
6.993LeuPro: 6.993 ± 2.507
3.814LeuGln: 3.814 ± 0.952
1.907LeuArg: 1.907 ± 0.671
10.807LeuSer: 10.807 ± 2.306
6.993LeuThr: 6.993 ± 0.939
3.179LeuVal: 3.179 ± 0.592
0.636LeuTrp: 0.636 ± 0.388
3.179LeuTyr: 3.179 ± 1.138
0.0LeuXaa: 0.0 ± 0.0
Met
1.271MetAla: 1.271 ± 1.477
0.0MetCys: 0.0 ± 0.0
0.0MetAsp: 0.0 ± 0.0
0.636MetGlu: 0.636 ± 0.741
0.0MetPhe: 0.0 ± 0.0
0.636MetGly: 0.636 ± 0.388
0.0MetHis: 0.0 ± 0.0
0.636MetIle: 0.636 ± 0.739
3.179MetLys: 3.179 ± 1.02
1.271MetLeu: 1.271 ± 0.605
0.0MetMet: 0.0 ± 0.0
1.271MetAsn: 1.271 ± 0.695
0.0MetPro: 0.0 ± 0.0
0.636MetGln: 0.636 ± 0.388
1.271MetArg: 1.271 ± 0.605
0.636MetSer: 0.636 ± 0.388
0.0MetThr: 0.0 ± 0.0
0.0MetVal: 0.0 ± 0.0
0.636MetTrp: 0.636 ± 0.739
1.271MetTyr: 1.271 ± 0.746
0.0MetXaa: 0.0 ± 0.0
Asn
6.357AsnAla: 6.357 ± 1.956
0.0AsnCys: 0.0 ± 0.0
5.722AsnAsp: 5.722 ± 1.948
7.629AsnGlu: 7.629 ± 1.135
5.722AsnPhe: 5.722 ± 0.753
3.179AsnGly: 3.179 ± 0.83
0.636AsnHis: 0.636 ± 0.388
5.086AsnIle: 5.086 ± 2.043
7.629AsnLys: 7.629 ± 1.717
12.715AsnLeu: 12.715 ± 0.69
0.636AsnMet: 0.636 ± 0.739
9.536AsnAsn: 9.536 ± 2.027
3.179AsnPro: 3.179 ± 1.02
4.45AsnGln: 4.45 ± 1.569
2.543AsnArg: 2.543 ± 2.034
5.086AsnSer: 5.086 ± 1.111
4.45AsnThr: 4.45 ± 1.954
2.543AsnVal: 2.543 ± 1.052
0.636AsnTrp: 0.636 ± 0.388
8.9AsnTyr: 8.9 ± 2.469
0.0AsnXaa: 0.0 ± 0.0
Pro
0.0ProAla: 0.0 ± 0.0
1.271ProCys: 1.271 ± 0.518
3.179ProAsp: 3.179 ± 1.387
1.271ProGlu: 1.271 ± 0.746
2.543ProPhe: 2.543 ± 1.067
2.543ProGly: 2.543 ± 0.965
0.636ProHis: 0.636 ± 0.623
3.179ProIle: 3.179 ± 0.592
0.636ProLys: 0.636 ± 0.623
6.357ProLeu: 6.357 ± 2.129
0.636ProMet: 0.636 ± 0.388
4.45ProAsn: 4.45 ± 0.658
0.636ProPro: 0.636 ± 0.623
3.179ProGln: 3.179 ± 1.02
1.271ProArg: 1.271 ± 1.246
3.179ProSer: 3.179 ± 1.879
3.179ProThr: 3.179 ± 0.973
1.907ProVal: 1.907 ± 1.163
0.0ProTrp: 0.0 ± 0.0
2.543ProTyr: 2.543 ± 1.551
0.0ProXaa: 0.0 ± 0.0
Gln
3.179GlnAla: 3.179 ± 1.02
0.0GlnCys: 0.0 ± 0.0
3.179GlnAsp: 3.179 ± 1.357
1.271GlnGlu: 1.271 ± 0.775
3.179GlnPhe: 3.179 ± 1.464
0.636GlnGly: 0.636 ± 0.778
0.636GlnHis: 0.636 ± 0.623
5.086GlnIle: 5.086 ± 2.875
4.45GlnLys: 4.45 ± 0.972
5.086GlnLeu: 5.086 ± 2.172
0.636GlnMet: 0.636 ± 0.739
4.45GlnAsn: 4.45 ± 1.247
1.271GlnPro: 1.271 ± 0.605
4.45GlnGln: 4.45 ± 3.255
3.179GlnArg: 3.179 ± 1.387
1.271GlnSer: 1.271 ± 0.518
3.179GlnThr: 3.179 ± 1.938
3.814GlnVal: 3.814 ± 1.047
0.636GlnTrp: 0.636 ± 0.388
1.271GlnTyr: 1.271 ± 0.957
0.0GlnXaa: 0.0 ± 0.0
Arg
1.271ArgAla: 1.271 ± 1.477
1.907ArgCys: 1.907 ± 0.808
1.907ArgAsp: 1.907 ± 1.079
1.907ArgGlu: 1.907 ± 1.535
0.636ArgPhe: 0.636 ± 0.741
3.179ArgGly: 3.179 ± 1.495
0.0ArgHis: 0.0 ± 0.0
2.543ArgIle: 2.543 ± 0.953
2.543ArgLys: 2.543 ± 1.21
0.636ArgLeu: 0.636 ± 0.623
0.636ArgMet: 0.636 ± 0.388
3.814ArgAsn: 3.814 ± 1.733
1.907ArgPro: 1.907 ± 0.671
2.543ArgGln: 2.543 ± 1.037
1.271ArgArg: 1.271 ± 0.893
1.907ArgSer: 1.907 ± 0.91
0.636ArgThr: 0.636 ± 0.388
1.271ArgVal: 1.271 ± 0.518
0.0ArgTrp: 0.0 ± 0.0
3.179ArgTyr: 3.179 ± 1.092
0.0ArgXaa: 0.0 ± 0.0
Ser
1.271SerAla: 1.271 ± 1.104
1.907SerCys: 1.907 ± 0.671
4.45SerAsp: 4.45 ± 1.336
3.814SerGlu: 3.814 ± 0.755
4.45SerPhe: 4.45 ± 1.885
1.907SerGly: 1.907 ± 1.163
0.636SerHis: 0.636 ± 0.388
5.722SerIle: 5.722 ± 2.149
7.629SerLys: 7.629 ± 1.342
7.629SerLeu: 7.629 ± 1.792
1.271SerMet: 1.271 ± 0.937
7.629SerAsn: 7.629 ± 1.971
3.179SerPro: 3.179 ± 0.973
5.086SerGln: 5.086 ± 0.751
3.814SerArg: 3.814 ± 0.896
6.357SerSer: 6.357 ± 2.551
2.543SerThr: 2.543 ± 1.194
2.543SerVal: 2.543 ± 0.965
0.0SerTrp: 0.0 ± 0.0
5.086SerTyr: 5.086 ± 0.705
0.0SerXaa: 0.0 ± 0.0
Thr
2.543ThrAla: 2.543 ± 0.953
0.0ThrCys: 0.0 ± 0.0
1.907ThrAsp: 1.907 ± 1.436
2.543ThrGlu: 2.543 ± 0.446
3.179ThrPhe: 3.179 ± 1.464
1.271ThrGly: 1.271 ± 0.695
1.271ThrHis: 1.271 ± 0.775
3.814ThrIle: 3.814 ± 1.802
3.814ThrLys: 3.814 ± 1.657
3.814ThrLeu: 3.814 ± 1.474
0.636ThrMet: 0.636 ± 0.388
3.814ThrAsn: 3.814 ± 0.928
3.179ThrPro: 3.179 ± 0.973
3.814ThrGln: 3.814 ± 1.452
1.907ThrArg: 1.907 ± 0.808
5.722ThrSer: 5.722 ± 1.105
4.45ThrThr: 4.45 ± 1.275
0.636ThrVal: 0.636 ± 0.388
0.0ThrTrp: 0.0 ± 0.0
5.086ThrTyr: 5.086 ± 1.203
0.0ThrXaa: 0.0 ± 0.0
Val
1.907ValAla: 1.907 ± 0.698
0.636ValCys: 0.636 ± 0.388
0.636ValAsp: 0.636 ± 0.739
3.814ValGlu: 3.814 ± 1.055
1.271ValPhe: 1.271 ± 0.775
0.636ValGly: 0.636 ± 0.388
0.0ValHis: 0.0 ± 0.0
3.814ValIle: 3.814 ± 1.672
3.814ValLys: 3.814 ± 0.502
3.814ValLeu: 3.814 ± 1.341
1.271ValMet: 1.271 ± 0.746
3.814ValAsn: 3.814 ± 1.236
3.179ValPro: 3.179 ± 1.309
1.271ValGln: 1.271 ± 1.017
1.907ValArg: 1.907 ± 0.671
5.086ValSer: 5.086 ± 1.385
2.543ValThr: 2.543 ± 1.233
3.814ValVal: 3.814 ± 1.192
0.636ValTrp: 0.636 ± 0.388
3.179ValTyr: 3.179 ± 1.309
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.636TrpAsp: 0.636 ± 0.388
0.636TrpGlu: 0.636 ± 0.739
0.0TrpPhe: 0.0 ± 0.0
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
0.636TrpLys: 0.636 ± 0.739
0.636TrpLeu: 0.636 ± 0.388
0.0TrpMet: 0.0 ± 0.0
0.0TrpAsn: 0.0 ± 0.0
0.0TrpPro: 0.0 ± 0.0
0.636TrpGln: 0.636 ± 0.388
1.271TrpArg: 1.271 ± 0.518
0.0TrpSer: 0.0 ± 0.0
0.636TrpThr: 0.636 ± 0.388
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.814TyrAla: 3.814 ± 0.928
1.907TyrCys: 1.907 ± 1.163
3.814TyrAsp: 3.814 ± 1.454
2.543TyrGlu: 2.543 ± 1.21
8.9TyrPhe: 8.9 ± 2.775
2.543TyrGly: 2.543 ± 1.037
1.271TyrHis: 1.271 ± 0.518
3.814TyrIle: 3.814 ± 1.895
6.357TyrLys: 6.357 ± 2.485
7.629TyrLeu: 7.629 ± 2.059
0.636TyrMet: 0.636 ± 0.388
6.993TyrAsn: 6.993 ± 2.728
1.907TyrPro: 1.907 ± 0.93
2.543TyrGln: 2.543 ± 1.037
1.907TyrArg: 1.907 ± 0.698
3.814TyrSer: 3.814 ± 0.896
1.907TyrThr: 1.907 ± 1.268
3.179TyrVal: 3.179 ± 1.134
0.0TyrTrp: 0.0 ± 0.0
5.722TyrTyr: 5.722 ± 1.3
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 5 proteins (1574 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski