Mycetocola manganoxydans

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Microbacteriaceae; Mycetocola

Average proteome isoelectric point is 5.99

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2854 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3L6ZVU0|A0A3L6ZVU0_9MICO Uncharacterized protein OS=Mycetocola manganoxydans OX=699879 GN=D9V29_05695 PE=4 SV=1
MM1 pKa = 7.93IDD3 pKa = 3.2MDD5 pKa = 4.74ADD7 pKa = 3.64TFEE10 pKa = 5.13ALVGEE15 pKa = 4.72VFDD18 pKa = 5.09ALPDD22 pKa = 3.67NMVDD26 pKa = 3.42GLVNVAIMIEE36 pKa = 4.2DD37 pKa = 3.74LPEE40 pKa = 5.27DD41 pKa = 4.01GSLDD45 pKa = 4.32LLGLYY50 pKa = 10.2HH51 pKa = 7.2GVALTDD57 pKa = 3.44RR58 pKa = 11.84DD59 pKa = 3.62QYY61 pKa = 11.99GFGEE65 pKa = 4.64LPDD68 pKa = 4.37MISIYY73 pKa = 10.17RR74 pKa = 11.84DD75 pKa = 3.31PLLALAEE82 pKa = 4.39DD83 pKa = 4.25VNHH86 pKa = 6.42LRR88 pKa = 11.84EE89 pKa = 4.39QIHH92 pKa = 5.07VTLVHH97 pKa = 6.88EE98 pKa = 4.4IAHH101 pKa = 6.63FYY103 pKa = 11.05GIDD106 pKa = 3.85DD107 pKa = 5.13DD108 pKa = 4.54EE109 pKa = 4.43LHH111 pKa = 6.49ALGWAA116 pKa = 3.68

Molecular weight: 12.92 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3L6ZM51|A0A3L6ZM51_9MICO Autoinducer-2 kinase OS=Mycetocola manganoxydans OX=699879 GN=D9V29_12305 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.42KK7 pKa = 8.47RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.22RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.87KK16 pKa = 9.7HH17 pKa = 5.84RR18 pKa = 11.84KK19 pKa = 8.56LLRR22 pKa = 11.84KK23 pKa = 7.78TRR25 pKa = 11.84HH26 pKa = 3.65QRR28 pKa = 11.84RR29 pKa = 11.84NKK31 pKa = 9.78KK32 pKa = 9.85

Molecular weight: 4.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2854

0

2854

915423

32

1942

320.8

34.41

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.519 ± 0.057

0.486 ± 0.011

6.198 ± 0.042

5.684 ± 0.044

3.294 ± 0.03

8.717 ± 0.041

1.9 ± 0.023

4.907 ± 0.036

2.39 ± 0.035

10.202 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.809 ± 0.018

2.359 ± 0.024

5.251 ± 0.033

2.789 ± 0.022

6.762 ± 0.05

6.284 ± 0.034

6.224 ± 0.037

8.712 ± 0.042

1.464 ± 0.022

2.05 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski