Campylobacter lanienae

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter

Average proteome isoelectric point is 6.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1504 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1X9SRH5|A0A1X9SRH5_9PROT Cell division protein FtsZ OS=Campylobacter lanienae OX=75658 GN=ftsZ PE=3 SV=1
MM1 pKa = 7.12TNIVKK6 pKa = 10.55FGAVVVAATAILSSSAAAQGVFVGVEE32 pKa = 3.96GALLQSQVKK41 pKa = 10.38LDD43 pKa = 4.73DD44 pKa = 4.44IYY46 pKa = 11.06PSVLDD51 pKa = 4.31DD52 pKa = 4.79PKK54 pKa = 10.79DD55 pKa = 3.55TSIEE59 pKa = 4.01LGLKK63 pKa = 9.93GGYY66 pKa = 10.31DD67 pKa = 3.88FDD69 pKa = 4.9AFRR72 pKa = 11.84VWGGYY77 pKa = 7.09SYY79 pKa = 9.71RR80 pKa = 11.84TKK82 pKa = 10.89GSEE85 pKa = 4.12DD86 pKa = 3.67YY87 pKa = 11.44NMKK90 pKa = 10.75DD91 pKa = 2.78GADD94 pKa = 4.5FINGEE99 pKa = 4.64FNWQTHH105 pKa = 6.28NILVGADD112 pKa = 3.66YY113 pKa = 10.24TPSLTDD119 pKa = 3.2SFKK122 pKa = 11.05LALGAYY128 pKa = 7.31TGLSIVKK135 pKa = 10.46GEE137 pKa = 4.09FSGQAEE143 pKa = 4.55YY144 pKa = 8.32TTDD147 pKa = 2.95GLTYY151 pKa = 11.35VMDD154 pKa = 4.52NDD156 pKa = 3.87STTGTGAIFGLKK168 pKa = 10.16LGGIYY173 pKa = 10.13EE174 pKa = 4.2VVEE177 pKa = 3.98NNEE180 pKa = 3.61IEE182 pKa = 4.28FGIKK186 pKa = 9.97GDD188 pKa = 3.82YY189 pKa = 7.79QTTGIEE195 pKa = 4.3DD196 pKa = 3.57YY197 pKa = 11.58DD198 pKa = 4.25NILNYY203 pKa = 10.09GVYY206 pKa = 10.08VGYY209 pKa = 10.55NYY211 pKa = 10.94KK212 pKa = 10.51FF213 pKa = 3.32

Molecular weight: 23.06 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A381D8V0|A0A381D8V0_9PROT Acetolactate synthase OS=Campylobacter lanienae OX=75658 GN=ilvH PE=3 SV=1
MM1 pKa = 7.28KK2 pKa = 9.42RR3 pKa = 11.84TYY5 pKa = 10.06QPHH8 pKa = 5.76KK9 pKa = 7.92TPKK12 pKa = 9.96KK13 pKa = 7.47RR14 pKa = 11.84THH16 pKa = 5.94GFRR19 pKa = 11.84VRR21 pKa = 11.84MKK23 pKa = 9.07TKK25 pKa = 10.15NGRR28 pKa = 11.84KK29 pKa = 9.33VISARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.31GRR39 pKa = 11.84ARR41 pKa = 11.84LAAA44 pKa = 4.44

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1504

0

1504

472411

14

1507

314.1

35.18

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.415 ± 0.061

1.119 ± 0.026

5.832 ± 0.052

6.123 ± 0.062

5.014 ± 0.059

6.221 ± 0.063

1.528 ± 0.021

9.513 ± 0.066

8.201 ± 0.059

9.706 ± 0.062

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.388 ± 0.03

6.169 ± 0.066

2.95 ± 0.034

2.922 ± 0.036

3.472 ± 0.04

7.227 ± 0.054

4.316 ± 0.039

5.5 ± 0.051

0.675 ± 0.019

3.709 ± 0.035
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski