Deinococcus yavapaiensis KR-236

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus yavapaiensis

Average proteome isoelectric point is 6.76

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4447 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A318S7L4|A0A318S7L4_9DEIO Tetratricopeptide repeat protein OS=Deinococcus yavapaiensis KR-236 OX=694435 GN=DES52_10569 PE=3 SV=1
MM1 pKa = 7.22TRR3 pKa = 11.84TIRR6 pKa = 11.84TLALAALTLTTGLASASSVLSYY28 pKa = 10.86VATYY32 pKa = 9.81DD33 pKa = 3.4AQGYY37 pKa = 7.74YY38 pKa = 11.03SNVATLDD45 pKa = 3.49ANQNGVTTSLFVPASLLGLDD65 pKa = 4.5DD66 pKa = 4.36VSGTDD71 pKa = 3.37EE72 pKa = 4.42SGSVQLTAITTSVSGVSFDD91 pKa = 5.14LNAASIASTALQDD104 pKa = 3.04GMLRR108 pKa = 11.84VDD110 pKa = 4.2VIAYY114 pKa = 10.01SDD116 pKa = 3.41GWQGNGVYY124 pKa = 10.09PVVLTLKK131 pKa = 9.07NTSTGQSVDD140 pKa = 3.2VQANVVVTNNAEE152 pKa = 3.74

Molecular weight: 15.58 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A318S2X6|A0A318S2X6_9DEIO Carbon-monoxide dehydrogenase small subunit OS=Deinococcus yavapaiensis KR-236 OX=694435 GN=DES52_11596 PE=4 SV=1
MM1 pKa = 7.75LIHH4 pKa = 6.31VLSAVIGLGPTFFSAALLRR23 pKa = 11.84GGPSPVALRR32 pKa = 11.84HH33 pKa = 5.17NLALFSALSAFPKK46 pKa = 10.27IGGTLTVSAGWRR58 pKa = 11.84SSGVVSRR65 pKa = 11.84GRR67 pKa = 3.21

Molecular weight: 6.85 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4447

0

4447

1404029

27

4291

315.7

34.35

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.041 ± 0.051

0.586 ± 0.01

5.571 ± 0.031

5.8 ± 0.038

3.646 ± 0.023

8.225 ± 0.039

2.214 ± 0.023

3.324 ± 0.032

2.73 ± 0.033

11.382 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.747 ± 0.015

2.619 ± 0.028

5.149 ± 0.027

2.935 ± 0.022

7.971 ± 0.052

5.69 ± 0.028

6.104 ± 0.044

8.612 ± 0.033

1.401 ± 0.015

2.253 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski