Pseudooceanicola flagellatus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudooceanicola

Average proteome isoelectric point is 6.2

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4189 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1W2EB30|A0A1W2EB30_9RHOB 2-keto-myo-inositol isomerase OS=Pseudooceanicola flagellatus OX=1387277 GN=SAMN06295998_12520 PE=4 SV=1
MM1 pKa = 7.1SASRR5 pKa = 11.84LTLAAALAASTAIAAPAFAGSLDD28 pKa = 3.78NTLSEE33 pKa = 4.89PEE35 pKa = 3.77PAAPVAVVAPAPLYY49 pKa = 10.7DD50 pKa = 3.34WTGPSIGAQLGFGDD64 pKa = 5.01IEE66 pKa = 4.36TEE68 pKa = 3.86NAGGVEE74 pKa = 4.26GDD76 pKa = 3.18GGLYY80 pKa = 10.49GLRR83 pKa = 11.84AYY85 pKa = 10.93YY86 pKa = 10.44DD87 pKa = 3.79YY88 pKa = 11.75DD89 pKa = 3.38FGNYY93 pKa = 7.29VVGGGIQYY101 pKa = 10.51DD102 pKa = 3.88EE103 pKa = 4.92SDD105 pKa = 3.23IDD107 pKa = 3.48IDD109 pKa = 4.83GAATLDD115 pKa = 3.39KK116 pKa = 10.94VFRR119 pKa = 11.84AGLRR123 pKa = 11.84AGVDD127 pKa = 3.58LNRR130 pKa = 11.84TFLYY134 pKa = 9.07GTGGYY139 pKa = 10.42AKK141 pKa = 10.69AFTEE145 pKa = 4.5DD146 pKa = 3.85DD147 pKa = 3.84AVSLGDD153 pKa = 3.56SNGYY157 pKa = 9.28FVGLGAEE164 pKa = 4.21HH165 pKa = 7.15FLTEE169 pKa = 4.0KK170 pKa = 9.43VTVGGEE176 pKa = 3.82ILYY179 pKa = 9.64HH180 pKa = 6.06QFDD183 pKa = 4.85DD184 pKa = 4.64FDD186 pKa = 4.96ISDD189 pKa = 3.89VEE191 pKa = 4.64ANATTANVSVNYY203 pKa = 10.29RR204 pKa = 11.84FF205 pKa = 3.5

Molecular weight: 21.35 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1W1ZNB3|A0A1W1ZNB3_9RHOB Acetylornithine aminotransferase OS=Pseudooceanicola flagellatus OX=1387277 GN=argD PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLVRR12 pKa = 11.84KK13 pKa = 9.18RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.42GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37AGRR28 pKa = 11.84KK29 pKa = 8.54ILNARR34 pKa = 11.84RR35 pKa = 11.84AQGRR39 pKa = 11.84KK40 pKa = 9.34SLSAA44 pKa = 3.83

Molecular weight: 5.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4189

0

4189

1299626

29

2149

310.2

33.77

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.888 ± 0.048

0.93 ± 0.012

6.237 ± 0.031

5.802 ± 0.039

3.74 ± 0.024

8.517 ± 0.038

2.087 ± 0.018

5.257 ± 0.029

3.297 ± 0.032

9.982 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.817 ± 0.018

2.733 ± 0.021

4.967 ± 0.024

3.291 ± 0.022

6.711 ± 0.038

5.347 ± 0.028

5.565 ± 0.026

7.193 ± 0.034

1.389 ± 0.016

2.249 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski