Klugiella xanthotipulae

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Microbacteriaceae; Klugiella

Average proteome isoelectric point is 6.06

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2573 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A543I682|A0A543I682_9MICO NadR type nicotinamide-nucleotide adenylyltransferase OS=Klugiella xanthotipulae OX=244735 GN=FB466_0909 PE=4 SV=1
MM1 pKa = 7.15LQVSGDD7 pKa = 3.49TSACRR12 pKa = 11.84PCNSGTDD19 pKa = 3.77LAQGGLTVHH28 pKa = 6.13NRR30 pKa = 11.84THH32 pKa = 7.34LAQHH36 pKa = 6.93HH37 pKa = 5.77GRR39 pKa = 11.84APATADD45 pKa = 3.27TPHH48 pKa = 7.43RR49 pKa = 11.84SRR51 pKa = 11.84SGSRR55 pKa = 11.84RR56 pKa = 11.84LTYY59 pKa = 9.55PALVAVLALGCGSLSLPAYY78 pKa = 8.72ATDD81 pKa = 3.83GDD83 pKa = 4.44VIDD86 pKa = 4.65GQSVAEE92 pKa = 4.38EE93 pKa = 4.22VQAAPPAADD102 pKa = 3.77TAPEE106 pKa = 4.09ALPVGEE112 pKa = 5.15AVPEE116 pKa = 4.37DD117 pKa = 3.84SAPAAVEE124 pKa = 4.25TPPVADD130 pKa = 3.84PVAVEE135 pKa = 4.81SPAEE139 pKa = 4.08APVAGPPVPVAAAAAAPSGITPFAGDD165 pKa = 4.08TILGSVSPATGDD177 pKa = 3.47EE178 pKa = 4.29AGGTTVILTGEE189 pKa = 4.45CFTDD193 pKa = 3.63AEE195 pKa = 4.25AVIFEE200 pKa = 4.53LTSAASFVVDD210 pKa = 4.18SDD212 pKa = 4.02TQITAVTPAGSGTVPVQVVGGPGCTFATLPNAFTYY247 pKa = 7.49EE248 pKa = 4.0APVPVVDD255 pKa = 4.4PPVVTSLTPDD265 pKa = 3.72RR266 pKa = 11.84GPVGGGSDD274 pKa = 3.49VTITGEE280 pKa = 3.9NLADD284 pKa = 3.66VTGVTVDD291 pKa = 4.72GIAATGLTGVTDD303 pKa = 3.87TSLTVTTPSHH313 pKa = 6.09AAGPVDD319 pKa = 3.77VVVTTTHH326 pKa = 5.48GTSNAGLFTYY336 pKa = 10.31HH337 pKa = 6.91PVASVTGVSPGSGSDD352 pKa = 3.24AGGTTVTITGTCFVGATGVTFGGTPAVSYY381 pKa = 11.08SVLTDD386 pKa = 3.27STLTAEE392 pKa = 4.68TPAGTGTVDD401 pKa = 3.32VSVATTGEE409 pKa = 4.37CGSGATLAGSFTYY422 pKa = 9.67TATVPAVPTITGISPTEE439 pKa = 4.26GPDD442 pKa = 3.2TGGTTVTVTGTNLDD456 pKa = 4.41GIQEE460 pKa = 4.2VTVDD464 pKa = 3.79GTAVAQFSLLTDD476 pKa = 3.79TSLTFVTEE484 pKa = 3.74AHH486 pKa = 6.51APGSVVVRR494 pKa = 11.84VRR496 pKa = 11.84DD497 pKa = 3.65ASDD500 pKa = 3.4EE501 pKa = 4.27SATSSFTFVAAPVVEE516 pKa = 4.83APAITSLSPTRR527 pKa = 11.84GTIDD531 pKa = 3.19GGTLVTITGEE541 pKa = 4.05RR542 pKa = 11.84LGAATAVAVGGTAVAAFTTVSDD564 pKa = 3.86TEE566 pKa = 4.27ITFEE570 pKa = 4.25TAAHH574 pKa = 6.35AAGTVDD580 pKa = 4.21VTVTDD585 pKa = 4.4ANGEE589 pKa = 4.19SAPAEE594 pKa = 4.04FTFFAPLAVTGILPATGSEE613 pKa = 4.14AGGEE617 pKa = 4.43TVTITGTCFTGAVDD631 pKa = 3.69VLFGSEE637 pKa = 4.0PATSFVVVTDD647 pKa = 3.57TSISAVVPAGSAGLVNVTVTGSVEE671 pKa = 4.12CGNSVLTGGYY681 pKa = 9.83EE682 pKa = 4.2YY683 pKa = 10.43VTVVQPVLGSITPDD697 pKa = 2.93SGPATGGTVVTATGSGFEE715 pKa = 4.29TAVSVTFDD723 pKa = 3.8GLPATNVTVVSDD735 pKa = 3.59TEE737 pKa = 4.21ITVVTPAHH745 pKa = 6.08GAGVVDD751 pKa = 3.87VVVNGPTDD759 pKa = 3.29SALQLSPFAVAFAGITPAASNAVSFTYY786 pKa = 10.33EE787 pKa = 3.67AVTTPGVGEE796 pKa = 4.19SGGAAGNVTGGAAGAPAPAPTAVGLAVTGLGGVTALLSAALLALVAGRR844 pKa = 11.84FLLVRR849 pKa = 11.84ARR851 pKa = 11.84RR852 pKa = 11.84GEE854 pKa = 3.91LSS856 pKa = 3.05

Molecular weight: 82.81 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A543I6V2|A0A543I6V2_9MICO DNA-binding response OmpR family regulator OS=Klugiella xanthotipulae OX=244735 GN=FB466_1118 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 9.45VHH17 pKa = 5.31GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84SILSARR35 pKa = 11.84RR36 pKa = 11.84TKK38 pKa = 10.82GRR40 pKa = 11.84TKK42 pKa = 10.84LSAA45 pKa = 3.61

Molecular weight: 5.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2573

0

2573

880817

29

5270

342.3

36.67

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.104 ± 0.064

0.607 ± 0.014

5.61 ± 0.038

5.586 ± 0.052

3.104 ± 0.03

8.773 ± 0.068

2.0 ± 0.026

4.786 ± 0.038

2.098 ± 0.037

10.025 ± 0.064

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.749 ± 0.023

2.587 ± 0.034

5.395 ± 0.04

2.9 ± 0.028

6.741 ± 0.07

6.435 ± 0.041

7.107 ± 0.091

8.82 ± 0.061

1.397 ± 0.024

2.175 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski