Podoviridae sp. cty5g4

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae

Average proteome isoelectric point is 6.9

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 85 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5Q2WB09|A0A5Q2WB09_9CAUD Uncharacterized protein OS=Podoviridae sp. cty5g4 OX=2656717 PE=4 SV=1
MM1 pKa = 7.58KK2 pKa = 10.34YY3 pKa = 10.01IYY5 pKa = 10.14TMPDD9 pKa = 3.23CPRR12 pKa = 11.84CDD14 pKa = 3.65VLKK17 pKa = 10.66KK18 pKa = 10.49RR19 pKa = 11.84YY20 pKa = 9.43IEE22 pKa = 4.35DD23 pKa = 4.17GIMFTEE29 pKa = 4.61RR30 pKa = 11.84NADD33 pKa = 3.54RR34 pKa = 11.84MKK36 pKa = 10.96SPEE39 pKa = 3.97DD40 pKa = 3.84TIDD43 pKa = 3.45TEE45 pKa = 4.56ALIQASMQNMEE56 pKa = 4.85LPVEE60 pKa = 4.13IEE62 pKa = 4.12VEE64 pKa = 4.16KK65 pKa = 10.65TEE67 pKa = 4.62SDD69 pKa = 3.37FDD71 pKa = 3.53ICQSCEE77 pKa = 3.94YY78 pKa = 9.3YY79 pKa = 10.34PCDD82 pKa = 3.47SAPNADD88 pKa = 3.64YY89 pKa = 11.24CSVRR93 pKa = 11.84EE94 pKa = 4.11

Molecular weight: 10.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5Q2W5K2|A0A5Q2W5K2_9CAUD Uncharacterized protein OS=Podoviridae sp. cty5g4 OX=2656717 PE=4 SV=1
MM1 pKa = 7.21WRR3 pKa = 11.84VVWAGILLPGSPAHH17 pKa = 5.86TCNLAFRR24 pKa = 11.84RR25 pKa = 11.84HH26 pKa = 4.07KK27 pKa = 9.6TGWQISTTTALVFGQATGYY46 pKa = 10.41LL47 pKa = 3.81

Molecular weight: 5.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

85

0

85

16379

29

1299

192.7

21.56

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.168 ± 0.327

1.343 ± 0.175

5.11 ± 0.304

6.661 ± 0.389

3.553 ± 0.153

7.247 ± 0.401

1.545 ± 0.133

7.821 ± 0.309

7.638 ± 0.512

7.693 ± 0.337

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.467 ± 0.171

5.312 ± 0.337

4.133 ± 0.307

3.413 ± 0.298

4.414 ± 0.233

6.514 ± 0.298

6.527 ± 0.413

5.995 ± 0.227

1.38 ± 0.167

4.066 ± 0.189
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski