Paracoccus isoporae

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus

Average proteome isoelectric point is 6.19

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3345 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1G6WDD2|A0A1G6WDD2_9RHOB N-(5'-phosphoribosyl)anthranilate isomerase OS=Paracoccus isoporae OX=591205 GN=trpF PE=3 SV=1
MM1 pKa = 8.1RR2 pKa = 11.84ITTGICGLLAAAMLSGGAALAQTEE26 pKa = 4.34DD27 pKa = 3.66AEE29 pKa = 4.48AAASDD34 pKa = 3.81MPEE37 pKa = 4.39AEE39 pKa = 4.41SVTTDD44 pKa = 2.59SDD46 pKa = 3.77GAAGQDD52 pKa = 3.45ATGSMSGTDD61 pKa = 3.23TDD63 pKa = 4.56ADD65 pKa = 4.21PGTMSGSDD73 pKa = 3.05TGADD77 pKa = 3.37SGAMSGSDD85 pKa = 3.13TAEE88 pKa = 4.12TEE90 pKa = 4.17PGGAAAGMGTDD101 pKa = 3.79AAPAHH106 pKa = 6.47SATISDD112 pKa = 4.29AEE114 pKa = 4.38GAQIGAVEE122 pKa = 4.5LSFSASGLAVVDD134 pKa = 3.92ISFTGVPAGEE144 pKa = 4.4HH145 pKa = 5.8AVHH148 pKa = 6.51FHH150 pKa = 4.32QTGMCEE156 pKa = 4.08APFDD160 pKa = 4.17SAGDD164 pKa = 3.89HH165 pKa = 6.58LAGDD169 pKa = 3.94MDD171 pKa = 4.83HH172 pKa = 7.24GVMAQNGPHH181 pKa = 7.07PGDD184 pKa = 3.56MPNITVPDD192 pKa = 3.64SGEE195 pKa = 3.54ISLTYY200 pKa = 9.08FVPGLTEE207 pKa = 5.28DD208 pKa = 5.12LVADD212 pKa = 4.35DD213 pKa = 5.64DD214 pKa = 4.17GTAFVIHH221 pKa = 6.49EE222 pKa = 4.52ASDD225 pKa = 3.95DD226 pKa = 3.84YY227 pKa = 11.34RR228 pKa = 11.84SQPSGDD234 pKa = 2.94AGGRR238 pKa = 11.84LGCAVVTEE246 pKa = 4.42AAGG249 pKa = 3.24

Molecular weight: 24.3 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1G7GFW0|A0A1G7GFW0_9RHOB Solute:Na+ symporter SSS family OS=Paracoccus isoporae OX=591205 GN=SAMN05421538_11336 PE=3 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSNLVRR13 pKa = 11.84TRR15 pKa = 11.84RR16 pKa = 11.84HH17 pKa = 4.63GFRR20 pKa = 11.84ARR22 pKa = 11.84MATKK26 pKa = 10.39AGRR29 pKa = 11.84AVLNRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 9.7GRR40 pKa = 11.84KK41 pKa = 8.85RR42 pKa = 11.84LSAA45 pKa = 3.96

Molecular weight: 5.25 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3345

0

3345

1059547

26

4924

316.8

34.29

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.998 ± 0.061

0.792 ± 0.013

6.318 ± 0.038

5.847 ± 0.038

3.526 ± 0.028

9.002 ± 0.046

1.971 ± 0.024

5.208 ± 0.033

2.526 ± 0.036

10.034 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.828 ± 0.021

2.413 ± 0.026

5.293 ± 0.033

3.25 ± 0.025

7.421 ± 0.057

5.109 ± 0.028

5.064 ± 0.034

6.898 ± 0.035

1.398 ± 0.02

2.104 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski