Amino acid dipepetide frequency for Amphibola crenata associated bacilladnavirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.177AlaAla: 3.177 ± 1.184
0.794AlaCys: 0.794 ± 0.522
1.589AlaAsp: 1.589 ± 1.971
3.177AlaGlu: 3.177 ± 1.184
1.589AlaPhe: 1.589 ± 0.85
5.56AlaGly: 5.56 ± 2.422
1.589AlaHis: 1.589 ± 1.044
3.177AlaIle: 3.177 ± 1.972
2.383AlaLys: 2.383 ± 1.221
6.354AlaLeu: 6.354 ± 2.287
3.971AlaMet: 3.971 ± 1.085
5.56AlaAsn: 5.56 ± 3.953
0.794AlaPro: 0.794 ± 0.874
0.794AlaGln: 0.794 ± 0.698
3.177AlaArg: 3.177 ± 1.508
5.56AlaSer: 5.56 ± 1.038
4.766AlaThr: 4.766 ± 1.617
2.383AlaVal: 2.383 ± 0.92
0.0AlaTrp: 0.0 ± 0.0
3.177AlaTyr: 3.177 ± 0.791
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
0.794CysAsp: 0.794 ± 0.522
0.794CysGlu: 0.794 ± 0.522
0.0CysPhe: 0.0 ± 0.0
0.794CysGly: 0.794 ± 0.522
0.0CysHis: 0.0 ± 0.0
1.589CysIle: 1.589 ± 0.628
0.794CysLys: 0.794 ± 0.522
1.589CysLeu: 1.589 ± 0.85
0.794CysMet: 0.794 ± 0.522
0.0CysAsn: 0.0 ± 0.0
0.0CysPro: 0.0 ± 0.0
1.589CysGln: 1.589 ± 0.628
0.794CysArg: 0.794 ± 0.698
1.589CysSer: 1.589 ± 0.628
0.0CysThr: 0.0 ± 0.0
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
5.56AspAla: 5.56 ± 2.99
0.794AspCys: 0.794 ± 0.698
11.12AspAsp: 11.12 ± 6.718
7.149AspGlu: 7.149 ± 2.959
3.177AspPhe: 3.177 ± 1.184
5.56AspGly: 5.56 ± 1.19
1.589AspHis: 1.589 ± 1.044
2.383AspIle: 2.383 ± 0.572
0.794AspLys: 0.794 ± 0.985
1.589AspLeu: 1.589 ± 1.044
2.383AspMet: 2.383 ± 1.21
1.589AspAsn: 1.589 ± 0.991
3.971AspPro: 3.971 ± 1.338
2.383AspGln: 2.383 ± 1.814
3.177AspArg: 3.177 ± 0.905
7.149AspSer: 7.149 ± 2.935
1.589AspThr: 1.589 ± 0.628
6.354AspVal: 6.354 ± 3.619
1.589AspTrp: 1.589 ± 1.971
3.971AspTyr: 3.971 ± 0.955
0.0AspXaa: 0.0 ± 0.0
Glu
2.383GluAla: 2.383 ± 1.21
0.794GluCys: 0.794 ± 0.522
8.737GluAsp: 8.737 ± 3.717
7.943GluGlu: 7.943 ± 2.919
3.177GluPhe: 3.177 ± 0.589
2.383GluGly: 2.383 ± 0.572
1.589GluHis: 1.589 ± 1.044
5.56GluIle: 5.56 ± 4.413
2.383GluLys: 2.383 ± 0.572
3.177GluLeu: 3.177 ± 1.511
0.794GluMet: 0.794 ± 0.874
0.794GluAsn: 0.794 ± 0.522
2.383GluPro: 2.383 ± 1.107
3.177GluGln: 3.177 ± 0.791
1.589GluArg: 1.589 ± 0.628
8.737GluSer: 8.737 ± 1.932
3.177GluThr: 3.177 ± 0.589
5.56GluVal: 5.56 ± 0.275
2.383GluTrp: 2.383 ± 1.174
2.383GluTyr: 2.383 ± 1.21
0.0GluXaa: 0.0 ± 0.0
Phe
0.0PheAla: 0.0 ± 0.0
1.589PheCys: 1.589 ± 1.044
2.383PheAsp: 2.383 ± 1.474
2.383PheGlu: 2.383 ± 0.92
3.177PhePhe: 3.177 ± 1.699
1.589PheGly: 1.589 ± 1.396
4.766PheHis: 4.766 ± 1.223
0.0PheIle: 0.0 ± 0.0
0.794PheLys: 0.794 ± 0.874
1.589PheLeu: 1.589 ± 0.628
1.589PheMet: 1.589 ± 0.901
3.177PheAsn: 3.177 ± 1.699
2.383PhePro: 2.383 ± 0.92
1.589PheGln: 1.589 ± 0.628
0.794PheArg: 0.794 ± 0.698
1.589PheSer: 1.589 ± 0.991
3.177PheThr: 3.177 ± 1.184
3.177PheVal: 3.177 ± 1.887
1.589PheTrp: 1.589 ± 1.044
0.794PheTyr: 0.794 ± 0.985
0.0PheXaa: 0.0 ± 0.0
Gly
5.56GlyAla: 5.56 ± 3.102
0.794GlyCys: 0.794 ± 0.698
2.383GlyAsp: 2.383 ± 1.814
3.971GlyGlu: 3.971 ± 1.901
2.383GlyPhe: 2.383 ± 1.732
6.354GlyGly: 6.354 ± 1.751
0.0GlyHis: 0.0 ± 0.0
2.383GlyIle: 2.383 ± 1.732
5.56GlyLys: 5.56 ± 2.208
3.971GlyLeu: 3.971 ± 1.812
0.794GlyMet: 0.794 ± 0.698
2.383GlyAsn: 2.383 ± 1.107
3.177GlyPro: 3.177 ± 0.791
4.766GlyGln: 4.766 ± 1.422
3.971GlyArg: 3.971 ± 1.487
0.794GlySer: 0.794 ± 0.698
4.766GlyThr: 4.766 ± 1.422
3.971GlyVal: 3.971 ± 1.967
1.589GlyTrp: 1.589 ± 0.628
1.589GlyTyr: 1.589 ± 0.991
0.0GlyXaa: 0.0 ± 0.0
His
3.971HisAla: 3.971 ± 1.487
1.589HisCys: 1.589 ± 0.628
0.794HisAsp: 0.794 ± 0.985
2.383HisGlu: 2.383 ± 1.094
0.794HisPhe: 0.794 ± 0.522
0.0HisGly: 0.0 ± 0.0
1.589HisHis: 1.589 ± 1.044
1.589HisIle: 1.589 ± 1.044
3.177HisLys: 3.177 ± 1.358
1.589HisLeu: 1.589 ± 0.991
0.794HisMet: 0.794 ± 0.874
3.177HisAsn: 3.177 ± 1.358
3.177HisPro: 3.177 ± 1.458
0.794HisGln: 0.794 ± 0.522
1.589HisArg: 1.589 ± 0.628
1.589HisSer: 1.589 ± 1.396
0.0HisThr: 0.0 ± 0.0
2.383HisVal: 2.383 ± 1.221
1.589HisTrp: 1.589 ± 1.044
0.0HisTyr: 0.0 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
2.383IleAla: 2.383 ± 1.307
0.0IleCys: 0.0 ± 0.0
4.766IleAsp: 4.766 ± 2.242
2.383IleGlu: 2.383 ± 1.094
0.794IlePhe: 0.794 ± 0.522
3.177IleGly: 3.177 ± 1.204
2.383IleHis: 2.383 ± 0.572
1.589IleIle: 1.589 ± 0.85
3.971IleLys: 3.971 ± 1.437
0.794IleLeu: 0.794 ± 0.522
1.589IleMet: 1.589 ± 1.044
3.971IleAsn: 3.971 ± 1.618
4.766IlePro: 4.766 ± 2.56
2.383IleGln: 2.383 ± 1.21
0.794IleArg: 0.794 ± 0.522
0.794IleSer: 0.794 ± 0.522
1.589IleThr: 1.589 ± 0.628
3.971IleVal: 3.971 ± 0.955
0.794IleTrp: 0.794 ± 0.522
2.383IleTyr: 2.383 ± 0.758
0.0IleXaa: 0.0 ± 0.0
Lys
1.589LysAla: 1.589 ± 0.991
0.0LysCys: 0.0 ± 0.0
5.56LysAsp: 5.56 ± 3.233
7.149LysGlu: 7.149 ± 2.431
3.177LysPhe: 3.177 ± 1.256
4.766LysGly: 4.766 ± 2.275
0.794LysHis: 0.794 ± 0.522
2.383LysIle: 2.383 ± 0.92
15.091LysLys: 15.091 ± 6.89
1.589LysLeu: 1.589 ± 0.85
1.589LysMet: 1.589 ± 0.628
0.794LysAsn: 0.794 ± 0.522
1.589LysPro: 1.589 ± 0.628
1.589LysGln: 1.589 ± 0.901
7.149LysArg: 7.149 ± 4.075
5.56LysSer: 5.56 ± 1.536
4.766LysThr: 4.766 ± 1.145
4.766LysVal: 4.766 ± 1.717
1.589LysTrp: 1.589 ± 1.044
3.177LysTyr: 3.177 ± 1.484
0.0LysXaa: 0.0 ± 0.0
Leu
3.177LeuAla: 3.177 ± 1.358
0.794LeuCys: 0.794 ± 0.698
3.971LeuAsp: 3.971 ± 1.966
2.383LeuGlu: 2.383 ± 1.474
4.766LeuPhe: 4.766 ± 1.617
3.971LeuGly: 3.971 ± 2.348
0.0LeuHis: 0.0 ± 0.0
2.383LeuIle: 2.383 ± 1.174
4.766LeuLys: 4.766 ± 1.717
5.56LeuLeu: 5.56 ± 2.422
1.589LeuMet: 1.589 ± 1.747
3.177LeuAsn: 3.177 ± 1.184
3.177LeuPro: 3.177 ± 1.801
1.589LeuGln: 1.589 ± 0.628
0.794LeuArg: 0.794 ± 0.698
3.177LeuSer: 3.177 ± 0.791
7.149LeuThr: 7.149 ± 2.179
2.383LeuVal: 2.383 ± 0.92
2.383LeuTrp: 2.383 ± 1.107
0.0LeuTyr: 0.0 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
4.766MetAla: 4.766 ± 1.517
0.0MetCys: 0.0 ± 0.0
3.971MetAsp: 3.971 ± 2.488
0.794MetGlu: 0.794 ± 0.985
1.589MetPhe: 1.589 ± 0.85
0.794MetGly: 0.794 ± 0.698
2.383MetHis: 2.383 ± 0.572
0.794MetIle: 0.794 ± 0.522
1.589MetLys: 1.589 ± 1.044
3.177MetLeu: 3.177 ± 1.432
0.0MetMet: 0.0 ± 0.0
0.0MetAsn: 0.0 ± 0.0
3.177MetPro: 3.177 ± 1.511
2.383MetGln: 2.383 ± 1.474
0.794MetArg: 0.794 ± 0.698
1.589MetSer: 1.589 ± 1.044
1.589MetThr: 1.589 ± 0.991
0.794MetVal: 0.794 ± 0.522
0.0MetTrp: 0.0 ± 0.0
0.794MetTyr: 0.794 ± 0.522
0.0MetXaa: 0.0 ± 0.0
Asn
4.766AsnAla: 4.766 ± 1.617
0.0AsnCys: 0.0 ± 0.0
3.177AsnAsp: 3.177 ± 1.994
0.794AsnGlu: 0.794 ± 0.698
0.794AsnPhe: 0.794 ± 0.522
3.177AsnGly: 3.177 ± 2.083
1.589AsnHis: 1.589 ± 1.044
3.177AsnIle: 3.177 ± 1.699
3.177AsnLys: 3.177 ± 1.256
3.177AsnLeu: 3.177 ± 0.845
1.589AsnMet: 1.589 ± 0.628
2.383AsnAsn: 2.383 ± 1.566
4.766AsnPro: 4.766 ± 0.82
2.383AsnGln: 2.383 ± 0.92
3.177AsnArg: 3.177 ± 0.905
0.794AsnSer: 0.794 ± 0.522
5.56AsnThr: 5.56 ± 1.518
1.589AsnVal: 1.589 ± 0.628
0.0AsnTrp: 0.0 ± 0.0
2.383AsnTyr: 2.383 ± 1.221
0.0AsnXaa: 0.0 ± 0.0
Pro
5.56ProAla: 5.56 ± 2.26
0.0ProCys: 0.0 ± 0.0
5.56ProAsp: 5.56 ± 1.917
3.177ProGlu: 3.177 ± 1.204
5.56ProPhe: 5.56 ± 1.01
1.589ProGly: 1.589 ± 0.628
0.794ProHis: 0.794 ± 0.698
1.589ProIle: 1.589 ± 0.628
4.766ProLys: 4.766 ± 0.82
3.971ProLeu: 3.971 ± 1.618
2.383ProMet: 2.383 ± 1.174
0.794ProAsn: 0.794 ± 0.522
3.971ProPro: 3.971 ± 1.934
0.794ProGln: 0.794 ± 0.985
2.383ProArg: 2.383 ± 1.814
3.971ProSer: 3.971 ± 1.182
2.383ProThr: 2.383 ± 0.572
2.383ProVal: 2.383 ± 2.064
0.0ProTrp: 0.0 ± 0.0
2.383ProTyr: 2.383 ± 1.107
0.0ProXaa: 0.0 ± 0.0
Gln
2.383GlnAla: 2.383 ± 1.307
0.0GlnCys: 0.0 ± 0.0
0.794GlnAsp: 0.794 ± 0.522
3.971GlnGlu: 3.971 ± 0.921
1.589GlnPhe: 1.589 ± 1.044
2.383GlnGly: 2.383 ± 0.92
0.794GlnHis: 0.794 ± 0.698
1.589GlnIle: 1.589 ± 0.901
3.971GlnLys: 3.971 ± 1.902
1.589GlnLeu: 1.589 ± 0.991
0.0GlnMet: 0.0 ± 0.0
1.589GlnAsn: 1.589 ± 1.396
3.177GlnPro: 3.177 ± 0.791
0.794GlnGln: 0.794 ± 0.522
4.766GlnArg: 4.766 ± 2.37
0.794GlnSer: 0.794 ± 0.698
2.383GlnThr: 2.383 ± 0.572
3.177GlnVal: 3.177 ± 1.184
0.794GlnTrp: 0.794 ± 0.522
1.589GlnTyr: 1.589 ± 0.628
0.0GlnXaa: 0.0 ± 0.0
Arg
0.794ArgAla: 0.794 ± 0.698
0.794ArgCys: 0.794 ± 0.522
1.589ArgAsp: 1.589 ± 0.628
4.766ArgGlu: 4.766 ± 0.435
1.589ArgPhe: 1.589 ± 1.396
0.0ArgGly: 0.0 ± 0.0
3.177ArgHis: 3.177 ± 1.256
3.971ArgIle: 3.971 ± 0.688
6.354ArgLys: 6.354 ± 6.695
3.177ArgLeu: 3.177 ± 1.887
1.589ArgMet: 1.589 ± 0.495
3.971ArgAsn: 3.971 ± 0.955
2.383ArgPro: 2.383 ± 1.094
2.383ArgGln: 2.383 ± 0.92
5.56ArgArg: 5.56 ± 1.187
3.177ArgSer: 3.177 ± 0.905
3.971ArgThr: 3.971 ± 1.487
1.589ArgVal: 1.589 ± 0.901
1.589ArgTrp: 1.589 ± 0.901
0.794ArgTyr: 0.794 ± 0.522
0.0ArgXaa: 0.0 ± 0.0
Ser
3.177SerAla: 3.177 ± 0.905
0.794SerCys: 0.794 ± 0.874
1.589SerAsp: 1.589 ± 1.361
3.971SerGlu: 3.971 ± 0.955
1.589SerPhe: 1.589 ± 0.628
5.56SerGly: 5.56 ± 3.12
2.383SerHis: 2.383 ± 1.094
2.383SerIle: 2.383 ± 1.107
2.383SerLys: 2.383 ± 0.92
3.177SerLeu: 3.177 ± 0.589
0.0SerMet: 0.0 ± 0.0
6.354SerAsn: 6.354 ± 3.026
4.766SerPro: 4.766 ± 1.617
1.589SerGln: 1.589 ± 0.628
5.56SerArg: 5.56 ± 2.356
4.766SerSer: 4.766 ± 2.173
5.56SerThr: 5.56 ± 2.097
7.149SerVal: 7.149 ± 1.817
2.383SerTrp: 2.383 ± 0.92
0.794SerTyr: 0.794 ± 0.698
0.0SerXaa: 0.0 ± 0.0
Thr
5.56ThrAla: 5.56 ± 2.186
0.794ThrCys: 0.794 ± 0.522
4.766ThrAsp: 4.766 ± 2.339
3.177ThrGlu: 3.177 ± 1.801
0.0ThrPhe: 0.0 ± 0.0
3.177ThrGly: 3.177 ± 1.184
1.589ThrHis: 1.589 ± 0.991
3.971ThrIle: 3.971 ± 1.903
4.766ThrLys: 4.766 ± 2.173
4.766ThrLeu: 4.766 ± 1.62
3.177ThrMet: 3.177 ± 1.234
1.589ThrAsn: 1.589 ± 1.044
3.177ThrPro: 3.177 ± 2.087
3.971ThrGln: 3.971 ± 1.452
2.383ThrArg: 2.383 ± 1.221
6.354ThrSer: 6.354 ± 1.337
7.149ThrThr: 7.149 ± 3.274
2.383ThrVal: 2.383 ± 1.21
0.794ThrTrp: 0.794 ± 0.522
4.766ThrTyr: 4.766 ± 0.435
0.0ThrXaa: 0.0 ± 0.0
Val
1.589ValAla: 1.589 ± 1.044
0.794ValCys: 0.794 ± 0.522
5.56ValAsp: 5.56 ± 1.197
6.354ValGlu: 6.354 ± 5.396
0.794ValPhe: 0.794 ± 0.698
6.354ValGly: 6.354 ± 3.292
2.383ValHis: 2.383 ± 1.566
2.383ValIle: 2.383 ± 1.094
4.766ValLys: 4.766 ± 1.84
3.971ValLeu: 3.971 ± 1.182
2.383ValMet: 2.383 ± 1.486
4.766ValAsn: 4.766 ± 0.764
1.589ValPro: 1.589 ± 1.396
1.589ValGln: 1.589 ± 1.396
0.794ValArg: 0.794 ± 0.698
4.766ValSer: 4.766 ± 2.614
3.971ValThr: 3.971 ± 1.798
6.354ValVal: 6.354 ± 1.85
0.794ValTrp: 0.794 ± 0.522
0.794ValTyr: 0.794 ± 0.985
0.0ValXaa: 0.0 ± 0.0
Trp
1.589TrpAla: 1.589 ± 0.85
0.0TrpCys: 0.0 ± 0.0
2.383TrpAsp: 2.383 ± 1.566
0.794TrpGlu: 0.794 ± 0.698
0.794TrpPhe: 0.794 ± 0.522
1.589TrpGly: 1.589 ± 1.044
0.0TrpHis: 0.0 ± 0.0
0.794TrpIle: 0.794 ± 0.522
0.794TrpLys: 0.794 ± 0.985
1.589TrpLeu: 1.589 ± 0.901
1.589TrpMet: 1.589 ± 1.361
0.0TrpAsn: 0.0 ± 0.0
1.589TrpPro: 1.589 ± 1.044
0.794TrpGln: 0.794 ± 0.522
2.383TrpArg: 2.383 ± 0.572
0.0TrpSer: 0.0 ± 0.0
1.589TrpThr: 1.589 ± 1.044
0.794TrpVal: 0.794 ± 0.522
0.794TrpTrp: 0.794 ± 0.698
0.794TrpTyr: 0.794 ± 0.522
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.589TyrAla: 1.589 ± 0.991
0.794TyrCys: 0.794 ± 0.522
2.383TyrAsp: 2.383 ± 1.307
1.589TyrGlu: 1.589 ± 0.991
0.794TyrPhe: 0.794 ± 0.698
2.383TyrGly: 2.383 ± 1.174
3.177TyrHis: 3.177 ± 1.256
1.589TyrIle: 1.589 ± 0.628
2.383TyrLys: 2.383 ± 1.814
0.794TyrLeu: 0.794 ± 0.522
1.589TyrMet: 1.589 ± 0.85
2.383TyrAsn: 2.383 ± 0.758
0.0TyrPro: 0.0 ± 0.0
0.794TyrGln: 0.794 ± 0.985
2.383TyrArg: 2.383 ± 1.094
3.177TyrSer: 3.177 ± 1.256
3.177TyrThr: 3.177 ± 0.589
1.589TyrVal: 1.589 ± 1.361
0.0TyrTrp: 0.0 ± 0.0
2.383TyrTyr: 2.383 ± 1.107
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 4 proteins (1260 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski