Capybara microvirus Cap3_SP_344

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.77

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W8E2|A0A4P8W8E2_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_344 OX=2585432 PE=4 SV=1
MM1 pKa = 7.22HH2 pKa = 7.18NCWPSTPCGLVALTGDD18 pKa = 3.17ITQCEE23 pKa = 4.48DD24 pKa = 4.27CPDD27 pKa = 3.24IDD29 pKa = 5.37ARR31 pKa = 11.84FADD34 pKa = 4.07SFFEE38 pKa = 3.92EE39 pKa = 4.58TPRR42 pKa = 11.84YY43 pKa = 9.87DD44 pKa = 3.66EE45 pKa = 4.97RR46 pKa = 11.84CALMNDD52 pKa = 3.03ICSFSYY58 pKa = 10.8VDD60 pKa = 3.76EE61 pKa = 4.97NGDD64 pKa = 3.37YY65 pKa = 11.07DD66 pKa = 5.11LPFF69 pKa = 5.49

Molecular weight: 7.87 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W4T0|A0A4P8W4T0_9VIRU Minor capsid protein OS=Capybara microvirus Cap3_SP_344 OX=2585432 PE=4 SV=1
MM1 pKa = 7.65CLFPKK6 pKa = 10.49RR7 pKa = 11.84IRR9 pKa = 11.84NPKK12 pKa = 8.67KK13 pKa = 10.26DD14 pKa = 3.53FRR16 pKa = 11.84SGYY19 pKa = 9.65DD20 pKa = 3.74PEE22 pKa = 4.59WLTVPCGNCYY32 pKa = 10.86DD33 pKa = 5.17CIQKK37 pKa = 10.59NIRR40 pKa = 11.84DD41 pKa = 3.31WSARR45 pKa = 11.84ARR47 pKa = 11.84AEE49 pKa = 3.73YY50 pKa = 10.24HH51 pKa = 6.95DD52 pKa = 4.27YY53 pKa = 10.86KK54 pKa = 11.25EE55 pKa = 4.46KK56 pKa = 10.73GGCVLFPTLTYY67 pKa = 10.72NEE69 pKa = 4.45KK70 pKa = 10.7CCPCVNIGNKK80 pKa = 8.76SYY82 pKa = 10.98RR83 pKa = 11.84AFSKK87 pKa = 10.6RR88 pKa = 11.84DD89 pKa = 3.24VQHH92 pKa = 6.7FIKK95 pKa = 10.54KK96 pKa = 8.82FRR98 pKa = 11.84VYY100 pKa = 10.65VSRR103 pKa = 11.84TYY105 pKa = 10.96GKK107 pKa = 10.24EE108 pKa = 3.36FARR111 pKa = 11.84GIKK114 pKa = 10.43YY115 pKa = 9.45MIASEE120 pKa = 4.52FGTSSGKK127 pKa = 6.23THH129 pKa = 6.94RR130 pKa = 11.84PHH132 pKa = 5.38YY133 pKa = 10.21HH134 pKa = 6.75CLLFLPWRR142 pKa = 11.84PKK144 pKa = 9.39IRR146 pKa = 11.84KK147 pKa = 8.01ISSIIRR153 pKa = 11.84KK154 pKa = 7.33SWRR157 pKa = 11.84FGYY160 pKa = 9.63MSWSKK165 pKa = 11.15KK166 pKa = 9.35HH167 pKa = 5.37GAVINSVKK175 pKa = 10.49GISYY179 pKa = 9.0VCKK182 pKa = 10.64YY183 pKa = 8.65MCKK186 pKa = 9.8QSNWYY191 pKa = 9.51HH192 pKa = 4.87FTGDD196 pKa = 3.44VPRR199 pKa = 11.84YY200 pKa = 9.06IYY202 pKa = 10.82KK203 pKa = 10.64GDD205 pKa = 3.86DD206 pKa = 3.45RR207 pKa = 11.84YY208 pKa = 11.39CNPDD212 pKa = 3.21FEE214 pKa = 5.16KK215 pKa = 10.78LSKK218 pKa = 10.72VKK220 pKa = 10.1PFHH223 pKa = 6.03LQSIGFGLCLNKK235 pKa = 10.41YY236 pKa = 9.68VDD238 pKa = 3.46TSEE241 pKa = 5.34IIDD244 pKa = 3.78FRR246 pKa = 11.84FHH248 pKa = 6.58FPKK251 pKa = 10.7DD252 pKa = 3.25SAVPDD257 pKa = 4.01DD258 pKa = 3.63SCYY261 pKa = 9.94YY262 pKa = 9.88TIPQYY267 pKa = 10.98NLHH270 pKa = 6.38YY271 pKa = 10.34LIQDD275 pKa = 4.05KK276 pKa = 10.83IDD278 pKa = 4.13GEE280 pKa = 3.99WSYY283 pKa = 12.13KK284 pKa = 9.95NKK286 pKa = 10.21TYY288 pKa = 11.47DD289 pKa = 3.28FMQKK293 pKa = 9.66VFDD296 pKa = 4.46FKK298 pKa = 11.4VRR300 pKa = 11.84CNWYY304 pKa = 9.85HH305 pKa = 7.19LACQLDD311 pKa = 3.88KK312 pKa = 11.51DD313 pKa = 4.59LLNSCGISEE322 pKa = 4.35FNKK325 pKa = 10.71KK326 pKa = 9.04IDD328 pKa = 3.89NIFDD332 pKa = 3.79EE333 pKa = 4.56TSLNYY338 pKa = 10.11RR339 pKa = 11.84EE340 pKa = 4.46IANFMVSYY348 pKa = 10.56FGTNYY353 pKa = 9.54FPPIDD358 pKa = 4.61FYY360 pKa = 11.79CDD362 pKa = 3.18LGSSFRR368 pKa = 11.84HH369 pKa = 5.21WYY371 pKa = 8.29MRR373 pKa = 11.84YY374 pKa = 9.95LDD376 pKa = 4.41FDD378 pKa = 4.42SDD380 pKa = 3.69SRR382 pKa = 11.84RR383 pKa = 11.84AKK385 pKa = 10.11SDD387 pKa = 3.36CVTYY391 pKa = 9.88EE392 pKa = 4.01YY393 pKa = 11.18KK394 pKa = 10.78KK395 pKa = 9.48NTPLCYY401 pKa = 10.26VSLLLDD407 pKa = 4.06SIRR410 pKa = 11.84LSVEE414 pKa = 3.78NYY416 pKa = 10.15VKK418 pKa = 10.2GTTDD422 pKa = 3.77LKK424 pKa = 9.72RR425 pKa = 11.84HH426 pKa = 5.61KK427 pKa = 9.9FASRR431 pKa = 11.84KK432 pKa = 9.58KK433 pKa = 10.18VIDD436 pKa = 3.59YY437 pKa = 10.76NSNFSS442 pKa = 3.4

Molecular weight: 52.62 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1693

67

653

282.2

31.91

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.675 ± 1.868

2.185 ± 0.966

5.848 ± 0.963

5.08 ± 1.131

5.552 ± 0.942

6.084 ± 1.001

1.89 ± 0.428

4.607 ± 0.487

6.261 ± 1.152

8.328 ± 1.073

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.067 ± 0.324

5.611 ± 0.308

4.017 ± 0.375

3.721 ± 0.722

4.371 ± 0.671

9.569 ± 0.644

4.903 ± 0.834

6.143 ± 0.585

1.24 ± 0.431

5.848 ± 1.252
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski