Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_344

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
5.91AlaAla: 5.91 ± 3.294
0.591AlaCys: 0.591 ± 0.533
3.546AlaAsp: 3.546 ± 1.422
5.319AlaGlu: 5.319 ± 1.414
2.955AlaPhe: 2.955 ± 0.724
7.092AlaGly: 7.092 ± 2.774
2.955AlaHis: 2.955 ± 1.2
2.364AlaIle: 2.364 ± 1.301
2.364AlaLys: 2.364 ± 1.017
6.501AlaLeu: 6.501 ± 2.307
0.591AlaMet: 0.591 ± 0.414
2.955AlaAsn: 2.955 ± 0.552
0.591AlaPro: 0.591 ± 0.414
1.182AlaGln: 1.182 ± 0.967
3.546AlaArg: 3.546 ± 1.845
8.274AlaSer: 8.274 ± 3.687
2.955AlaThr: 2.955 ± 1.144
4.137AlaVal: 4.137 ± 1.381
0.0AlaTrp: 0.0 ± 0.0
2.955AlaTyr: 2.955 ± 1.275
0.0AlaXaa: 0.0 ± 0.0
Cys
0.591CysAla: 0.591 ± 0.733
0.591CysCys: 0.591 ± 0.533
2.364CysAsp: 2.364 ± 0.372
0.591CysGlu: 0.591 ± 0.733
0.591CysPhe: 0.591 ± 0.414
1.773CysGly: 1.773 ± 1.282
0.0CysHis: 0.0 ± 0.0
0.591CysIle: 0.591 ± 0.533
1.182CysLys: 1.182 ± 1.065
2.364CysLeu: 2.364 ± 1.755
0.0CysMet: 0.0 ± 0.407
1.182CysAsn: 1.182 ± 1.065
1.182CysPro: 1.182 ± 0.898
1.182CysGln: 1.182 ± 0.436
0.0CysArg: 0.0 ± 0.0
1.773CysSer: 1.773 ± 0.889
0.0CysThr: 0.0 ± 0.0
2.955CysVal: 2.955 ± 1.236
0.591CysTrp: 0.591 ± 0.733
1.773CysTyr: 1.773 ± 1.598
0.0CysXaa: 0.0 ± 0.0
Asp
1.773AspAla: 1.773 ± 1.292
2.955AspCys: 2.955 ± 0.914
2.364AspAsp: 2.364 ± 0.867
3.546AspGlu: 3.546 ± 1.597
6.501AspPhe: 6.501 ± 3.37
1.182AspGly: 1.182 ± 0.436
0.0AspHis: 0.0 ± 0.0
4.137AspIle: 4.137 ± 2.127
2.364AspLys: 2.364 ± 0.722
8.274AspLeu: 8.274 ± 2.342
1.182AspMet: 1.182 ± 0.46
1.773AspAsn: 1.773 ± 0.663
1.773AspPro: 1.773 ± 0.663
0.0AspGln: 0.0 ± 0.0
1.182AspArg: 1.182 ± 0.436
6.501AspSer: 6.501 ± 1.779
0.591AspThr: 0.591 ± 0.533
5.91AspVal: 5.91 ± 1.302
1.182AspTrp: 1.182 ± 0.436
5.319AspTyr: 5.319 ± 1.29
0.0AspXaa: 0.0 ± 0.0
Glu
3.546GluAla: 3.546 ± 1.536
0.591GluCys: 0.591 ± 0.484
1.182GluAsp: 1.182 ± 1.056
2.955GluGlu: 2.955 ± 1.416
2.955GluPhe: 2.955 ± 1.284
2.364GluGly: 2.364 ± 0.919
0.0GluHis: 0.0 ± 0.0
4.728GluIle: 4.728 ± 1.797
4.137GluLys: 4.137 ± 1.459
4.137GluLeu: 4.137 ± 1.549
1.773GluMet: 1.773 ± 1.216
5.319GluAsn: 5.319 ± 1.525
0.591GluPro: 0.591 ± 0.414
1.182GluGln: 1.182 ± 0.46
1.773GluArg: 1.773 ± 0.961
4.137GluSer: 4.137 ± 1.778
2.955GluThr: 2.955 ± 1.41
3.546GluVal: 3.546 ± 1.901
1.182GluTrp: 1.182 ± 1.065
1.773GluTyr: 1.773 ± 0.881
0.0GluXaa: 0.0 ± 0.0
Phe
4.137PheAla: 4.137 ± 0.674
0.591PheCys: 0.591 ± 0.414
5.91PheAsp: 5.91 ± 1.737
3.546PheGlu: 3.546 ± 1.424
0.591PhePhe: 0.591 ± 0.733
6.501PheGly: 6.501 ± 2.351
1.182PheHis: 1.182 ± 1.065
1.182PheIle: 1.182 ± 0.952
2.364PheLys: 2.364 ± 0.901
2.364PheLeu: 2.364 ± 0.681
1.773PheMet: 1.773 ± 1.254
3.546PheAsn: 3.546 ± 1.803
4.137PhePro: 4.137 ± 1.596
0.591PheGln: 0.591 ± 0.414
4.728PheArg: 4.728 ± 1.745
4.137PheSer: 4.137 ± 0.674
2.364PheThr: 2.364 ± 0.681
1.773PheVal: 1.773 ± 0.876
0.0PheTrp: 0.0 ± 0.0
4.137PheTyr: 4.137 ± 1.193
0.0PheXaa: 0.0 ± 0.0
Gly
2.364GlyAla: 2.364 ± 0.666
1.182GlyCys: 1.182 ± 0.436
2.955GlyAsp: 2.955 ± 1.561
2.364GlyGlu: 2.364 ± 0.651
1.182GlyPhe: 1.182 ± 0.609
4.137GlyGly: 4.137 ± 1.428
0.0GlyHis: 0.0 ± 0.0
3.546GlyIle: 3.546 ± 1.308
4.137GlyLys: 4.137 ± 0.961
8.274GlyLeu: 8.274 ± 3.224
1.182GlyMet: 1.182 ± 0.46
4.137GlyAsn: 4.137 ± 0.961
0.591GlyPro: 0.591 ± 0.484
2.955GlyGln: 2.955 ± 1.635
5.319GlyArg: 5.319 ± 2.188
7.092GlySer: 7.092 ± 2.638
4.137GlyThr: 4.137 ± 1.455
1.182GlyVal: 1.182 ± 0.829
0.591GlyTrp: 0.591 ± 0.414
3.546GlyTyr: 3.546 ± 1.327
0.0GlyXaa: 0.0 ± 0.0
His
1.182HisAla: 1.182 ± 0.46
1.182HisCys: 1.182 ± 0.436
1.182HisAsp: 1.182 ± 0.436
1.773HisGlu: 1.773 ± 0.864
3.546HisPhe: 3.546 ± 1.217
0.591HisGly: 0.591 ± 0.533
0.0HisHis: 0.0 ± 0.0
0.591HisIle: 0.591 ± 0.819
0.591HisLys: 0.591 ± 0.533
2.364HisLeu: 2.364 ± 1.108
0.0HisMet: 0.0 ± 0.0
0.591HisAsn: 0.591 ± 0.733
0.0HisPro: 0.0 ± 0.0
0.591HisGln: 0.591 ± 0.484
0.591HisArg: 0.591 ± 0.533
0.591HisSer: 0.591 ± 0.819
1.773HisThr: 1.773 ± 0.951
0.0HisVal: 0.0 ± 0.0
0.591HisTrp: 0.591 ± 0.533
1.182HisTyr: 1.182 ± 1.065
0.0HisXaa: 0.0 ± 0.0
Ile
4.137IleAla: 4.137 ± 0.904
1.182IleCys: 1.182 ± 1.192
5.319IleAsp: 5.319 ± 2.813
1.182IleGlu: 1.182 ± 0.829
2.364IlePhe: 2.364 ± 1.017
4.728IleGly: 4.728 ± 0.75
0.0IleHis: 0.0 ± 0.0
2.364IleIle: 2.364 ± 1.108
2.364IleLys: 2.364 ± 0.722
2.955IleLeu: 2.955 ± 1.186
0.591IleMet: 0.591 ± 0.819
2.364IleAsn: 2.364 ± 1.017
1.773IlePro: 1.773 ± 0.962
3.546IleGln: 3.546 ± 0.668
3.546IleArg: 3.546 ± 2.575
4.728IleSer: 4.728 ± 0.774
1.773IleThr: 1.773 ± 0.889
0.0IleVal: 0.0 ± 0.0
0.0IleTrp: 0.0 ± 0.0
1.182IleTyr: 1.182 ± 0.436
0.0IleXaa: 0.0 ± 0.0
Lys
4.137LysAla: 4.137 ± 2.725
0.591LysCys: 0.591 ± 0.533
2.364LysAsp: 2.364 ± 1.389
2.955LysGlu: 2.955 ± 0.857
4.728LysPhe: 4.728 ± 1.81
2.364LysGly: 2.364 ± 2.131
1.182LysHis: 1.182 ± 0.952
3.546LysIle: 3.546 ± 2.073
6.501LysLys: 6.501 ± 2.502
4.728LysLeu: 4.728 ± 1.107
0.0LysMet: 0.0 ± 0.0
5.91LysAsn: 5.91 ± 0.961
1.773LysPro: 1.773 ± 0.663
2.364LysGln: 2.364 ± 1.258
3.546LysArg: 3.546 ± 1.217
2.955LysSer: 2.955 ± 1.284
2.364LysThr: 2.364 ± 0.872
7.092LysVal: 7.092 ± 1.335
0.0LysTrp: 0.0 ± 0.0
3.546LysTyr: 3.546 ± 1.026
0.0LysXaa: 0.0 ± 0.0
Leu
8.274LeuAla: 8.274 ± 2.226
2.364LeuCys: 2.364 ± 0.722
8.274LeuAsp: 8.274 ± 2.063
2.364LeuGlu: 2.364 ± 1.912
4.137LeuPhe: 4.137 ± 1.455
7.092LeuGly: 7.092 ± 2.227
1.182LeuHis: 1.182 ± 0.436
4.137LeuIle: 4.137 ± 1.028
4.728LeuLys: 4.728 ± 1.705
7.683LeuLeu: 7.683 ± 1.92
2.955LeuMet: 2.955 ± 1.454
4.728LeuAsn: 4.728 ± 1.597
2.955LeuPro: 2.955 ± 1.183
4.728LeuGln: 4.728 ± 1.352
2.364LeuArg: 2.364 ± 1.094
5.91LeuSer: 5.91 ± 0.971
2.364LeuThr: 2.364 ± 1.034
5.91LeuVal: 5.91 ± 2.694
0.0LeuTrp: 0.0 ± 0.0
1.182LeuTyr: 1.182 ± 0.829
0.0LeuXaa: 0.0 ± 0.0
Met
0.591MetAla: 0.591 ± 0.414
1.182MetCys: 1.182 ± 1.065
0.591MetAsp: 0.591 ± 0.484
1.773MetGlu: 1.773 ± 0.729
0.591MetPhe: 0.591 ± 0.414
0.591MetGly: 0.591 ± 0.484
0.591MetHis: 0.591 ± 0.733
1.773MetIle: 1.773 ± 0.663
1.773MetLys: 1.773 ± 0.876
1.182MetLeu: 1.182 ± 0.955
0.0MetMet: 0.0 ± 0.0
1.182MetAsn: 1.182 ± 0.96
1.773MetPro: 1.773 ± 0.848
0.591MetGln: 0.591 ± 0.533
1.773MetArg: 1.773 ± 0.663
2.955MetSer: 2.955 ± 1.562
0.591MetThr: 0.591 ± 0.414
0.591MetVal: 0.591 ± 0.533
0.0MetTrp: 0.0 ± 0.0
0.591MetTyr: 0.591 ± 0.713
0.0MetXaa: 0.0 ± 0.0
Asn
1.182AsnAla: 1.182 ± 0.956
1.182AsnCys: 1.182 ± 0.898
2.364AsnAsp: 2.364 ± 1.196
1.773AsnGlu: 1.773 ± 0.288
3.546AsnPhe: 3.546 ± 0.668
2.364AsnGly: 2.364 ± 1.196
1.182AsnHis: 1.182 ± 0.849
3.546AsnIle: 3.546 ± 1.026
4.728AsnLys: 4.728 ± 2.319
6.501AsnLeu: 6.501 ± 1.968
0.0AsnMet: 0.0 ± 0.0
2.364AsnAsn: 2.364 ± 1.272
4.137AsnPro: 4.137 ± 0.711
4.137AsnGln: 4.137 ± 1.587
0.591AsnArg: 0.591 ± 0.414
4.728AsnSer: 4.728 ± 1.469
4.137AsnThr: 4.137 ± 1.028
1.182AsnVal: 1.182 ± 0.829
1.773AsnTrp: 1.773 ± 0.881
4.728AsnTyr: 4.728 ± 0.765
0.0AsnXaa: 0.0 ± 0.0
Pro
1.773ProAla: 1.773 ± 0.848
1.773ProCys: 1.773 ± 1.282
2.364ProAsp: 2.364 ± 1.034
2.955ProGlu: 2.955 ± 1.935
2.364ProPhe: 2.364 ± 0.727
0.591ProGly: 0.591 ± 0.414
1.773ProHis: 1.773 ± 0.926
2.364ProIle: 2.364 ± 0.372
3.546ProLys: 3.546 ± 2.022
3.546ProLeu: 3.546 ± 1.131
1.182ProMet: 1.182 ± 0.454
1.773ProAsn: 1.773 ± 0.951
1.182ProPro: 1.182 ± 0.436
1.773ProGln: 1.773 ± 0.599
1.773ProArg: 1.773 ± 0.705
3.546ProSer: 3.546 ± 1.225
1.773ProThr: 1.773 ± 0.831
1.773ProVal: 1.773 ± 1.243
1.773ProTrp: 1.773 ± 0.663
0.591ProTyr: 0.591 ± 0.819
0.0ProXaa: 0.0 ± 0.0
Gln
2.955GlnAla: 2.955 ± 1.147
0.591GlnCys: 0.591 ± 0.733
1.182GlnAsp: 1.182 ± 0.773
1.773GlnGlu: 1.773 ± 0.729
1.773GlnPhe: 1.773 ± 0.864
1.773GlnGly: 1.773 ± 0.729
1.182GlnHis: 1.182 ± 0.609
0.591GlnIle: 0.591 ± 0.414
4.728GlnLys: 4.728 ± 1.331
4.137GlnLeu: 4.137 ± 0.883
1.182GlnMet: 1.182 ± 0.967
1.182GlnAsn: 1.182 ± 0.46
1.182GlnPro: 1.182 ± 1.425
0.591GlnGln: 0.591 ± 0.414
2.364GlnArg: 2.364 ± 1.194
3.546GlnSer: 3.546 ± 0.806
1.773GlnThr: 1.773 ± 1.243
1.773GlnVal: 1.773 ± 1.383
0.0GlnTrp: 0.0 ± 0.0
2.955GlnTyr: 2.955 ± 0.733
0.0GlnXaa: 0.0 ± 0.0
Arg
4.137ArgAla: 4.137 ± 1.692
1.182ArgCys: 1.182 ± 0.898
1.773ArgAsp: 1.773 ± 1.12
3.546ArgGlu: 3.546 ± 1.602
4.137ArgPhe: 4.137 ± 1.184
1.182ArgGly: 1.182 ± 0.436
2.364ArgHis: 2.364 ± 0.867
1.182ArgIle: 1.182 ± 0.436
4.137ArgLys: 4.137 ± 1.459
2.955ArgLeu: 2.955 ± 0.978
1.182ArgMet: 1.182 ± 0.829
2.364ArgAsn: 2.364 ± 0.666
2.364ArgPro: 2.364 ± 0.872
1.773ArgGln: 1.773 ± 0.951
0.591ArgArg: 0.591 ± 0.533
2.364ArgSer: 2.364 ± 0.681
1.182ArgThr: 1.182 ± 0.609
1.773ArgVal: 1.773 ± 0.663
0.0ArgTrp: 0.0 ± 0.0
3.546ArgTyr: 3.546 ± 1.308
0.0ArgXaa: 0.0 ± 0.0
Ser
10.047SerAla: 10.047 ± 2.044
2.364SerCys: 2.364 ± 0.872
4.137SerAsp: 4.137 ± 1.14
3.546SerGlu: 3.546 ± 2.32
5.319SerPhe: 5.319 ± 1.417
8.274SerGly: 8.274 ± 2.056
0.0SerHis: 0.0 ± 0.0
3.546SerIle: 3.546 ± 1.026
2.364SerLys: 2.364 ± 1.532
4.728SerLeu: 4.728 ± 0.895
2.364SerMet: 2.364 ± 0.45
4.728SerAsn: 4.728 ± 0.686
2.955SerPro: 2.955 ± 1.228
2.955SerGln: 2.955 ± 1.393
2.955SerArg: 2.955 ± 1.615
12.411SerSer: 12.411 ± 3.764
8.274SerThr: 8.274 ± 2.831
6.501SerVal: 6.501 ± 2.202
2.955SerTrp: 2.955 ± 1.044
5.319SerTyr: 5.319 ± 1.63
0.0SerXaa: 0.0 ± 0.0
Thr
2.364ThrAla: 2.364 ± 1.094
0.0ThrCys: 0.0 ± 0.0
1.773ThrAsp: 1.773 ± 0.831
2.364ThrGlu: 2.364 ± 1.361
0.591ThrPhe: 0.591 ± 0.414
4.137ThrGly: 4.137 ± 0.824
0.591ThrHis: 0.591 ± 0.533
2.955ThrIle: 2.955 ± 0.578
0.591ThrLys: 0.591 ± 0.414
2.364ThrLeu: 2.364 ± 0.681
0.591ThrMet: 0.591 ± 0.414
0.591ThrAsn: 0.591 ± 0.533
3.546ThrPro: 3.546 ± 1.597
3.546ThrGln: 3.546 ± 1.225
0.591ThrArg: 0.591 ± 0.713
7.092ThrSer: 7.092 ± 1.707
4.137ThrThr: 4.137 ± 1.538
5.319ThrVal: 5.319 ± 1.784
0.0ThrTrp: 0.0 ± 0.0
5.91ThrTyr: 5.91 ± 2.087
0.0ThrXaa: 0.0 ± 0.0
Val
2.955ValAla: 2.955 ± 2.152
0.591ValCys: 0.591 ± 0.533
4.137ValAsp: 4.137 ± 1.139
5.319ValGlu: 5.319 ± 2.418
2.955ValPhe: 2.955 ± 0.733
2.364ValGly: 2.364 ± 1.094
1.182ValHis: 1.182 ± 0.46
1.773ValIle: 1.773 ± 1.037
5.319ValLys: 5.319 ± 1.3
4.728ValLeu: 4.728 ± 0.977
0.0ValMet: 0.0 ± 0.0
4.728ValAsn: 4.728 ± 1.855
5.319ValPro: 5.319 ± 1.438
1.773ValGln: 1.773 ± 0.926
1.773ValArg: 1.773 ± 0.926
7.683ValSer: 7.683 ± 1.957
1.773ValThr: 1.773 ± 0.288
1.773ValVal: 1.773 ± 0.951
0.591ValTrp: 0.591 ± 0.414
4.728ValTyr: 4.728 ± 1.948
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.591TrpAsp: 0.591 ± 0.414
0.0TrpGlu: 0.0 ± 0.0
0.591TrpPhe: 0.591 ± 0.414
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
0.591TrpLys: 0.591 ± 0.414
0.591TrpLeu: 0.591 ± 0.533
0.0TrpMet: 0.0 ± 0.0
0.0TrpAsn: 0.0 ± 0.0
0.591TrpPro: 0.591 ± 0.733
0.0TrpGln: 0.0 ± 0.0
1.182TrpArg: 1.182 ± 1.065
3.546TrpSer: 3.546 ± 1.308
1.182TrpThr: 1.182 ± 0.829
1.182TrpVal: 1.182 ± 0.829
0.591TrpTrp: 0.591 ± 0.414
1.773TrpTyr: 1.773 ± 1.598
0.0TrpXaa: 0.0 ± 0.0
Tyr
4.728TyrAla: 4.728 ± 2.187
1.182TyrCys: 1.182 ± 1.065
4.137TyrAsp: 4.137 ± 1.687
1.182TyrGlu: 1.182 ± 0.436
4.137TyrPhe: 4.137 ± 1.666
1.773TyrGly: 1.773 ± 0.288
3.546TyrHis: 3.546 ± 2.001
1.182TyrIle: 1.182 ± 0.436
4.137TyrLys: 4.137 ± 1.537
2.955TyrLeu: 2.955 ± 0.769
3.546TyrMet: 3.546 ± 1.974
4.728TyrAsn: 4.728 ± 0.765
1.773TyrPro: 1.773 ± 1.243
1.773TyrGln: 1.773 ± 0.729
3.546TyrArg: 3.546 ± 0.668
1.773TyrSer: 1.773 ± 0.729
2.955TyrThr: 2.955 ± 1.404
7.092TyrVal: 7.092 ± 1.738
0.591TyrTrp: 0.591 ± 0.414
1.773TyrTyr: 1.773 ± 0.663
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 6 proteins (1693 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski