Chimpanzee herpesvirus strain 105640

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Alphaherpesvirinae; Simplexvirus; Panine alphaherpesvirus 3

Average proteome isoelectric point is 7.28

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 74 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|K9MG54|K9MG54_9ALPH DNA primase OS=Chimpanzee herpesvirus strain 105640 OX=332937 GN=UL52 PE=3 SV=1
MM1 pKa = 7.97DD2 pKa = 6.11LLVDD6 pKa = 5.22DD7 pKa = 5.74LFADD11 pKa = 4.0ADD13 pKa = 4.47GVSSPPTRR21 pKa = 11.84PAGGPKK27 pKa = 8.46NTPAAPPLYY36 pKa = 9.66ATGRR40 pKa = 11.84LSQAQLMPSPPMPVPPAALFNRR62 pKa = 11.84LLDD65 pKa = 4.24DD66 pKa = 4.82LGFSAGPALCTMLDD80 pKa = 3.31TWNEE84 pKa = 3.9DD85 pKa = 3.45LFSGFPTNADD95 pKa = 3.44MYY97 pKa = 10.28RR98 pKa = 11.84EE99 pKa = 4.25CKK101 pKa = 9.87FLSTLPSDD109 pKa = 3.83VIEE112 pKa = 4.53WGDD115 pKa = 3.35AYY117 pKa = 11.22VPEE120 pKa = 5.04RR121 pKa = 11.84SQIDD125 pKa = 3.2IRR127 pKa = 11.84AHH129 pKa = 5.95GDD131 pKa = 3.29VAFPTLPATRR141 pKa = 11.84DD142 pKa = 3.5GLASYY147 pKa = 9.89YY148 pKa = 10.68EE149 pKa = 4.01AMAQFFRR156 pKa = 11.84GEE158 pKa = 3.49LRR160 pKa = 11.84ARR162 pKa = 11.84EE163 pKa = 3.85EE164 pKa = 4.07SYY166 pKa = 9.67RR167 pKa = 11.84TVLANFCSALYY178 pKa = 9.82RR179 pKa = 11.84YY180 pKa = 9.56LRR182 pKa = 11.84ASVRR186 pKa = 11.84QLHH189 pKa = 5.87RR190 pKa = 11.84QAHH193 pKa = 4.64MRR195 pKa = 11.84GRR197 pKa = 11.84DD198 pKa = 3.1RR199 pKa = 11.84DD200 pKa = 3.78LRR202 pKa = 11.84EE203 pKa = 3.82MLRR206 pKa = 11.84TTIADD211 pKa = 3.77RR212 pKa = 11.84YY213 pKa = 8.15YY214 pKa = 11.05RR215 pKa = 11.84EE216 pKa = 3.99TARR219 pKa = 11.84LARR222 pKa = 11.84VLFLHH227 pKa = 7.13LYY229 pKa = 10.43LFLTRR234 pKa = 11.84EE235 pKa = 4.38ILWAAYY241 pKa = 9.3AEE243 pKa = 4.24QMMRR247 pKa = 11.84PDD249 pKa = 5.09LFDD252 pKa = 4.58GLCCDD257 pKa = 4.14LEE259 pKa = 4.27SWRR262 pKa = 11.84QLACLFQPLMFINGSLTVRR281 pKa = 11.84GVPVEE286 pKa = 3.73ARR288 pKa = 11.84RR289 pKa = 11.84LRR291 pKa = 11.84EE292 pKa = 3.74LNHH295 pKa = 6.26IRR297 pKa = 11.84EE298 pKa = 4.46HH299 pKa = 6.68LNLPLIRR306 pKa = 11.84SAAAEE311 pKa = 4.22EE312 pKa = 4.44PGAPLTTPPVLQGNQARR329 pKa = 11.84ASGYY333 pKa = 10.54FMLLIRR339 pKa = 11.84AKK341 pKa = 10.0LDD343 pKa = 3.46SYY345 pKa = 11.74SSVATSEE352 pKa = 4.58GEE354 pKa = 4.25TVMRR358 pKa = 11.84EE359 pKa = 3.68HH360 pKa = 7.11AYY362 pKa = 10.56SRR364 pKa = 11.84GRR366 pKa = 11.84HH367 pKa = 4.78RR368 pKa = 11.84NNYY371 pKa = 8.94GSTIEE376 pKa = 4.57GLLDD380 pKa = 5.1LPDD383 pKa = 5.66DD384 pKa = 5.23DD385 pKa = 5.87DD386 pKa = 5.94APAEE390 pKa = 4.39AGLVAPRR397 pKa = 11.84MSFLSAGQHH406 pKa = 5.22PRR408 pKa = 11.84RR409 pKa = 11.84LSTAPLTDD417 pKa = 3.1VSLGDD422 pKa = 3.68EE423 pKa = 4.16LRR425 pKa = 11.84LGGEE429 pKa = 4.45EE430 pKa = 4.1VDD432 pKa = 3.85MTPVDD437 pKa = 3.71ALDD440 pKa = 5.63DD441 pKa = 4.22FDD443 pKa = 6.99LDD445 pKa = 3.58MLGDD449 pKa = 3.84VEE451 pKa = 5.02FPSPGMTHH459 pKa = 7.23DD460 pKa = 3.94PVPYY464 pKa = 10.11GALDD468 pKa = 3.42VADD471 pKa = 5.25FEE473 pKa = 4.53FEE475 pKa = 4.78QMFTDD480 pKa = 4.69ALGIDD485 pKa = 4.2DD486 pKa = 4.99FGGG489 pKa = 3.36

Molecular weight: 54.49 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q3C1Z5|Q3C1Z5_9ALPH Thymidine kinase OS=Chimpanzee herpesvirus strain 105640 OX=332937 GN=UL23 PE=3 SV=1
MM1 pKa = 7.67AARR4 pKa = 11.84TSSLSEE10 pKa = 3.72RR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84VLLAGVRR20 pKa = 11.84SHH22 pKa = 5.27TRR24 pKa = 11.84FYY26 pKa = 11.02KK27 pKa = 10.32AFARR31 pKa = 11.84EE32 pKa = 3.85VRR34 pKa = 11.84EE35 pKa = 4.03FNATRR40 pKa = 11.84ICGTLLTLMSGSLQGRR56 pKa = 11.84SLFEE60 pKa = 3.81ATRR63 pKa = 11.84VTLICEE69 pKa = 3.9VDD71 pKa = 3.8LGPRR75 pKa = 11.84RR76 pKa = 11.84PDD78 pKa = 3.88CICVFEE84 pKa = 4.16FANDD88 pKa = 3.31KK89 pKa = 9.57TLGGVCVILEE99 pKa = 4.58LKK101 pKa = 7.05TCKK104 pKa = 10.39YY105 pKa = 10.07ISSGDD110 pKa = 3.52TASKK114 pKa = 10.46RR115 pKa = 11.84EE116 pKa = 3.79QRR118 pKa = 11.84TTGMKK123 pKa = 9.7QLRR126 pKa = 11.84HH127 pKa = 4.98SVKK130 pKa = 10.24LLQSLAPPGDD140 pKa = 3.39KK141 pKa = 10.35VVYY144 pKa = 9.85LCPILVFVAQRR155 pKa = 11.84TLRR158 pKa = 11.84VSRR161 pKa = 11.84VTRR164 pKa = 11.84LVPQKK169 pKa = 10.43ISGNITAAVRR179 pKa = 11.84MLQSLSTYY187 pKa = 9.97AVPPEE192 pKa = 3.78PRR194 pKa = 11.84TRR196 pKa = 11.84QTRR199 pKa = 11.84RR200 pKa = 11.84RR201 pKa = 11.84GAAGGRR207 pKa = 11.84PQRR210 pKa = 11.84PPSPARR216 pKa = 11.84APDD219 pKa = 3.52GTEE222 pKa = 3.93GHH224 pKa = 7.19PSPPEE229 pKa = 3.78SDD231 pKa = 3.3TPSAVVVGVAAEE243 pKa = 4.32GGGVLQKK250 pKa = 10.28IAALFCVPVAAKK262 pKa = 10.14SKK264 pKa = 10.17PRR266 pKa = 11.84TKK268 pKa = 10.42TEE270 pKa = 3.55

Molecular weight: 29.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

74

0

74

39168

87

3129

529.3

57.16

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.906 ± 0.422

1.841 ± 0.112

5.162 ± 0.13

4.836 ± 0.139

3.424 ± 0.171

7.721 ± 0.225

2.66 ± 0.103

2.87 ± 0.153

1.665 ± 0.141

9.643 ± 0.224

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.67 ± 0.094

2.211 ± 0.149

8.826 ± 0.471

2.969 ± 0.133

8.609 ± 0.181

6.23 ± 0.206

5.9 ± 0.155

7.177 ± 0.192

1.151 ± 0.069

2.53 ± 0.134
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski